Wemheuer, Franziska

[["dc.bibliographiccitation.issue","5"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Liesegang, Heiko"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-04-28T12:41:35Z"],["dc.date.available","2020-04-28T12:41:35Z"],["dc.date.issued","2018"],["dc.description.abstract","Bacillus mycoides GM6LP is an endophyte isolated from plant tissues of Lolium perenne L. Here, we report its draft genome sequence (6.2 Mb), which contains 96 contigs and 6,129 protein-coding genes. Knowledge about its genome will enable us to evaluate the potential use of GM6LP as a plant growth-promoting bacterium."],["dc.identifier.doi","10.1128/genomeA.00011-18"],["dc.identifier.eissn","2169-8287"],["dc.identifier.pmid","29437086"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/64449"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.relation.issn","2169-8287"],["dc.title","Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","13"],["dc.bibliographiccitation.lastpage","21"],["dc.bibliographiccitation.seriesnr","2555"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Pfeiffer, Birgit"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.editor","Streit, Wolfgang R."],["dc.contributor.editor","Daniel, Rolf"],["dc.date.accessioned","2022-11-01T10:17:28Z"],["dc.date.available","2022-11-01T10:17:28Z"],["dc.date.issued","2023"],["dc.identifier.doi","10.1007/978-1-0716-2795-2_2"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/116819"],["dc.notes.intern","DOI-Import GROB-605"],["dc.publisher","Springer US"],["dc.publisher.place","New York, NY"],["dc.relation.crisseries","Methods in Molecular Biology"],["dc.relation.eisbn","978-1-0716-2795-2"],["dc.relation.isbn","978-1-0716-2794-5"],["dc.relation.ispartof","Metagenomics : Methods and Protocols"],["dc.title","Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a Universal cDNA as Universal Template for Marker Gene Studies"],["dc.type","book_chapter"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Granzow, Sandra"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Vidal, Stefan"],["dc.contributor.author","Wemheuer, Franziska"],["dc.date.accessioned","2020-12-10T18:37:01Z"],["dc.date.available","2020-12-10T18:37:01Z"],["dc.date.issued","2018"],["dc.description.abstract","Paenibacillus amylolyticus strain GM1FR is an endophyte isolated from aerial plant tissues of Festuca rubra L. Here, we report the draft genome sequence (7.3 Mb) of GM1FR containing 6,241 protein-coding genes, some of which are potentially involved in plant growth promotion and biocontrol."],["dc.identifier.doi","10.1128/genomeA.01516-17"],["dc.identifier.eissn","2169-8287"],["dc.identifier.pmid","29371353"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76813"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.relation.issn","2169-8287"],["dc.title","First Insights into the Draft Genome Sequence of the Endophyte Paenibacillus amylolyticus Strain GM1FR, Isolated from Festuca rubra L."],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","13"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","5"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Granzow, Sandra"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Vidal, Stefan"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-12-10T18:36:53Z"],["dc.date.available","2020-12-10T18:36:53Z"],["dc.date.issued","2017"],["dc.description.abstract","Pseudomonas putida GM4FR is an endophytic bacterium isolated from aerial plant tissues of Festuca rubra L. Functional annotation of the draft genome (7.1 Mb) revealed 6,272 predicted protein-encoding genes. The genome provides insights into the biocontrol and plant growth-promoting potential of P. putida GM4FR."],["dc.identifier.doi","10.1128/genomeA.00086-17"],["dc.identifier.eissn","2169-8287"],["dc.identifier.pmid","28360162"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76772"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.relation.issn","2169-8287"],["dc.title","Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Granzow, Sandra"],["dc.contributor.author","Liesegang, Heiko"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Vidal, Stefan"],["dc.contributor.author","Wemheuer, Franziska"],["dc.date.accessioned","2020-12-10T18:37:01Z"],["dc.date.available","2020-12-10T18:37:01Z"],["dc.date.issued","2018"],["dc.identifier.doi","10.1128/genomeA.01517-17"],["dc.identifier.eissn","2169-8287"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76814"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM5LP Isolated from Lolium perenne"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","S0176161721001024"],["dc.bibliographiccitation.firstpage","153463"],["dc.bibliographiccitation.journal","Journal of Plant Physiology"],["dc.bibliographiccitation.volume","263"],["dc.contributor.author","Meißner, Annika"],["dc.contributor.author","Granzow, Sandra"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Pfeiffer, Birgit"],["dc.date.accessioned","2021-09-01T06:42:56Z"],["dc.date.available","2021-09-01T06:42:56Z"],["dc.date.issued","2021"],["dc.identifier.doi","10.1016/j.jplph.2021.153463"],["dc.identifier.pii","S0176161721001024"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89178"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-455"],["dc.relation.issn","0176-1617"],["dc.title","The cropping system matters – Contrasting responses of winter faba bean (Vicia faba L.) genotypes to drought stress"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","323"],["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","Letters in Applied Microbiology"],["dc.bibliographiccitation.lastpage","329"],["dc.bibliographiccitation.volume","62"],["dc.contributor.author","Wemheuer, F."],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Kretzschmar, D."],["dc.contributor.author","Pfeiffer, B."],["dc.contributor.author","Herzog, Sven"],["dc.contributor.author","Daniel, Roy Thomas"],["dc.contributor.author","Vidal, Stefan"],["dc.date.accessioned","2018-11-07T10:16:27Z"],["dc.date.available","2018-11-07T10:16:27Z"],["dc.date.issued","2016"],["dc.description.abstract","Most plant species are colonized by endophytic bacteria. Despite their importance for plant health and growth, the response of these bacteria to grassland management regimes is still not understood. Hence, we investigated the bacterial community structure in three agricultural important grass species Dactylis glomerata L., Festuca rubra L. and Lolium perenne L. with regard to fertilizer application and different mowing frequencies. For this purpose, above-ground plant material was collected from the Grassland Management Experiment (GrassMan) in Germany in September 2010 and 2011. DNA was extracted from surface-sterilized plant tissue and subjected to 16S rRNA gene PCRs. Endophytic community structures were assessed by denaturing gradient gel electrophoresis (DGGE)-based analysis of obtained PCR products. DGGE fingerprints revealed that fertilizer application significantly altered the endophytic communities in L.perenne and F.rubra but not in D.glomerata. Although no direct effect of mowing was observed, mowing frequencies in combination with fertilizer application had a significant impact on endophyte bacterial community structures. However, this effect was not observed for all three grass species in both years. Therefore, our results showed that management regimes changed the bacterial endophyte communities, but this effect was plant-specific and varied over time. Significance and Impact of the StudyEndophytic bacteria play an important role in plant health and growth. However, studies addressing the influence of grassland management regimes on these bacteria in above-ground plant parts are still missing. In this study, we present first evidence that fertilizer application significantly impacted bacterial community structures in three agricultural important grass species, whereas mowing had only a minor effect. Moreover, this effect was plant-specific and thus not visible for all grass species in each year. Consequently, this study sheds new light into the complex interaction of microbes and plants."],["dc.identifier.doi","10.1111/lam.12551"],["dc.identifier.isi","000373000600005"],["dc.identifier.pmid","26834040"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/41042"],["dc.language.iso","en"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.relation.issn","1472-765X"],["dc.relation.issn","0266-8254"],["dc.title","Impact of grassland management regimes on bacterial endophyte diversity differs with grass species"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dspace.entity.type","Publication"]]

[["dc.contributor.author","Wemheuer, Franziska"],["dc.date.accessioned","2020-04-29T05:58:55Z"],["dc.date.available","2020-04-29T05:58:55Z"],["dc.date.issued","2013"],["dc.description.abstract","In the last years, plant-associated bacterial communities caught the attention of investigators due to their importance for both plant health and the environmental balance. Despite the increasing number of studies, there is still a knowledge gap about the influence of management regimes on the diversity of plant-associated bacteria in grassland ecosystems. In this study, we gained new and interesting insights into the diversity of plant-associated bacteria in grassland ecosystems. All investigations in this study were carried out in the same area, the GrassMan experimental field in the Solling Uplands, central Germany. The GrassMan project was set up in 2008. It was conducted in a matrix of meadow plots at a permanent grassland site. The full-factorial design of GrassMan included two mowing frequencies (mowing once per year in July vs. mowing thrice per year in May, July, and September) and two fertilization treatments (no vs. fertilization with NPK). A third factor, the gradient of species richness, was manipulated by selective herbicide applications targeting either dicots or monocots. The first aim of this study was to investigate the effect of the different mowing and fertilization regimes onto the bacterial endophytic community in three grass species, Festuca rubra, Lolium perenne, and Dactylis glomerata, respectively. Therefore, tiller samples were taken from the dicot-reduced plots in September 2010 as well as in April, July, and September 2011. Total DNA was extracted from the collected samples and subjected to 16S rRNA gene PCRs. Community structures were assessed by DGGE-based analysis of the generated PCR products. We found differences in bacterial endophyte community structures with respect to the grassland management regimes investigated. While fertilizer application had a high impact onto endophytic diversity in both F. rubra and L. perenne, the endophytic community structure in D. glomerata was not influenced by this management regime. Moreover, tillers of L. perenne derived from unfertilized plots grouped in distinct clusters indicating a more similar bacterial community composition in these plots when analyzing for the influence of the mowing treatment. We also recorded a strong seasonal effect on community composition. As a consequence, both the season and the host plant have to be regarded in further studies as they might alter the effects of different grassland management regimes on endophytic bacterial community structures. The second aim of this study was to investigate the effect of above-ground herbivory on the bacterial community composition in the rhizosphere. Therefore, a lysimeter experiment was established in autumn 2010. Following a two-week exposure to herbivory by grasshoppers and snails, soil samples were collected from the lysimeters in summer 2011. To gain insights into the composition of the plant-associated bacterial communities in the rhizosphere, total DNA was extracted from the collected samples and subjected to 16S rRNA gene PCRs. Community structure were assessed either by DGGE analysis or pyrosequencing of the obtained PCR products. Whereas herbivory did not seem to affect the bacterial richness, slight changes in the relative abundances of certain bacterial groups were recorded. For example, an uncultured Acidobacterium was significantly affected by herbivory. As part of the lysimeter experiment, we also investigated the influence of sward composition and the different management regimes on the bacterial communities in the rhizosphere. Both the herbicide application and lower mowing frequencies decreased the bacterial richness in the rhizosphere. Moreover, no differences in bacterial richness between fertilized and unfertilized plots were recorded. Further analyses revealed that a variety of distinct bacterial groups and species in the rhizosphere do respond to the treatments studied. For example, the abundance of the Acidobacteria was significantly reduced in fertilized plots. The opposite was observed for the Actinobacteria. In conclusion, plant-associated bacteria in the endosphere and in the rhizosphere are affected by management regimes. Evaluating the impact of different grassland management regimes and above-ground herbivory onto plant-associated bacteria may results in a better understanding of the multitrophic interaction between plant species, bacterial communities, and above-ground herbivores. Furthermore, the results of this study will help to predict the impact of different grassland management regimes onto plant-associated bacterial communities and related effects on soil ecosystems."],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/64465"],["dc.language.iso","en"],["dc.title","Influence of Grassland Management and Herbivory on Diversity and Ecology of plant-associated Bacterial Communities"],["dc.type","thesis"],["dc.type.internalPublication","yes"],["dc.type.subtype","dissertation"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","13"],["dc.bibliographiccitation.lastpage","22"],["dc.bibliographiccitation.volume","1539"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Pfeiffer, Birgit"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.editor","Streit, W."],["dc.contributor.editor","Daniel, R."],["dc.date.accessioned","2020-03-12T09:01:08Z"],["dc.date.available","2020-03-12T09:01:08Z"],["dc.date.issued","2017"],["dc.description.abstract","Microbial communities play an important role in marine ecosystem processes. Although the number of studies targeting marker genes such as the 16S rRNA gene has been increased in the last few years, the vast majority of marine diversity is rather unexplored. Moreover, most studies focused on the entire bacterial community and thus disregarded active microbial community players. Here, we describe a detailed protocol for the simultaneous extraction of DNA and RNA from marine water samples and for the generation of cDNA from the isolated RNA which can be used as a universal template in various marker gene studies."],["dc.identifier.doi","10.1007/978-1-4939-6691-2_2"],["dc.identifier.pmid","27900681"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/63326"],["dc.language.iso","en"],["dc.publisher","Humana Press"],["dc.publisher.place","New York, NY"],["dc.relation.eisbn","978-1-4939-6691-2"],["dc.relation.eissn","1940-6029"],["dc.relation.isbn","978-1-4939-6689-9"],["dc.relation.ispartof","Metagenomics. Methods in Molecular Biology"],["dc.relation.issn","1064-3745"],["dc.title","Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies"],["dc.type","book_chapter"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","3717239"],["dc.bibliographiccitation.firstpage","1"],["dc.bibliographiccitation.journal","Archaea"],["dc.bibliographiccitation.lastpage","12"],["dc.bibliographiccitation.volume","2019"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","von Hoyningen-Huene, Avril Jean Elisabeth"],["dc.contributor.author","Pohlner, Marion"],["dc.contributor.author","Degenhardt, Julius"],["dc.contributor.author","Engelen, Bert"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-03-12T08:50:29Z"],["dc.date.available","2020-03-12T08:50:29Z"],["dc.date.issued","2019"],["dc.description.abstract","Information on environmental conditions shaping archaeal communities thriving at the seafloor of the central Pacific Ocean is limited. The present study was conducted to investigate the diversity, composition, and function of both entire and potentially active archaeal communities within Pacific deep-sea sediments. For this purpose, sediment samples were taken along the 180° meridian of the central Pacific Ocean. Community composition and diversity were assessed by Illumina tag sequencing targeting archaeal 16S rRNA genes and transcripts. Archaeal communities were dominated by Candidatus Nitrosopumilus (Thaumarchaeota) and other members of the Nitrosopumilaceae (Thaumarchaeota), but higher relative abundances of the Marine Group II (Euryarchaeota) were observed in the active compared to the entire archaeal community. The composition of the entire and the active archaeal communities was strongly linked to primary production (chlorophyll content), explaining more than 40% of the variance. Furthermore, we found a strong correlation of the entire archaeal community composition to latitude and silicic acid content, while the active community was significantly correlated with primary production and ferric oxide content. We predicted functional profiles from 16S rRNA data to assess archaeal community functions. Latitude was significantly correlated with functional profiles of the entire community, whereas those of the active community were significantly correlated with nitrate and chlorophyll content. The results of the present study provide first insights into benthic archaeal communities in the Pacific Ocean and environmental conditions shaping their diversity, distribution, and function. Additionally, they might serve as a template for further studies investigating archaea colonizing deep-sea sediments."],["dc.identifier.doi","10.1155/2019/3717239"],["dc.identifier.pmid","31015799"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/63323"],["dc.language.iso","en"],["dc.relation.eissn","1472-3654"],["dc.relation.issn","1472-3646"],["dc.relation.issn","1472-3654"],["dc.title","Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]