Daniel, Rolf

[["dc.bibliographiccitation.firstpage","1"],["dc.bibliographiccitation.journal","Basic and Applied Ecology"],["dc.bibliographiccitation.lastpage","12"],["dc.bibliographiccitation.volume","49"],["dc.contributor.author","Tiede, Julia"],["dc.contributor.author","Diepenbruck, Melanie"],["dc.contributor.author","Gadau, Jürgen"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Scherber, Christoph"],["dc.date.accessioned","2021-04-14T08:30:12Z"],["dc.date.available","2021-04-14T08:30:12Z"],["dc.date.issued","2020"],["dc.identifier.doi","10.1016/j.baae.2020.09.004"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/83147"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-399"],["dc.relation.issn","1439-1791"],["dc.title","Seasonal variation in the diet of the serotine bat (Eptesicus serotinus): A high-resolution analysis using DNA metabarcoding"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","14183"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","Scientific Reports"],["dc.bibliographiccitation.volume","9"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Vidal, Stefan"],["dc.date.accessioned","2020-03-12T08:51:55Z"],["dc.date.available","2020-03-12T08:51:55Z"],["dc.date.issued","2019"],["dc.description.abstract","Green islands (the re-greening of senescent leaf tissues) are particularly evident on leaves infected with fungal pathogens. To date, there is only a limited number of studies investigating foliar endophytic microorganisms in phytopathogen-infected leaves. Here, we analysed bacterial and fungal endophyte communities in leaves without green islands (control leaves; CL), within green island areas (GLA) and the surrounding yellow leaf areas (YLA) of leaves with green islands of Acer campestre and A. platanoides. GLA samples of A. campestre and A. platanoides were dominated by Sawadaea polyfida and S. bicornis, respectively, suggesting that these fungi might be responsible for the green islands. We detected a higher fungal richness and diversity in CL compared to GLA samples of A. campestre. Leaf status (CL, GLA, YLA) significantly altered the composition of fungal communities of A. campestre. This was related to differences in fungal community composition between YLA and GLA samples. Site was the main driver of bacterial communities, suggesting that bacterial and fungal endophytes are shaped by different factors. Overall, we observed Acer species-specific responses of endophyte communities towards the presence of green islands and/or leaf type, which might be attributed to several fungi and bacteria specifically associated with one Acer species."],["dc.identifier.doi","10.1038/s41598-019-50540-2"],["dc.identifier.pmid","31578453"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/16477"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/63324"],["dc.language.iso","en"],["dc.notes.intern","Merged from goescholar"],["dc.relation.eissn","2045-2322"],["dc.relation.issn","2045-2322"],["dc.rights","CC BY 4.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/4.0"],["dc.title","Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","5"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Liesegang, Heiko"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-04-28T12:41:35Z"],["dc.date.available","2020-04-28T12:41:35Z"],["dc.date.issued","2018"],["dc.description.abstract","Bacillus mycoides GM6LP is an endophyte isolated from plant tissues of Lolium perenne L. Here, we report its draft genome sequence (6.2 Mb), which contains 96 contigs and 6,129 protein-coding genes. Knowledge about its genome will enable us to evaluate the potential use of GM6LP as a plant growth-promoting bacterium."],["dc.identifier.doi","10.1128/genomeA.00011-18"],["dc.identifier.eissn","2169-8287"],["dc.identifier.pmid","29437086"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/64449"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.relation.issn","2169-8287"],["dc.title","Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","13"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","5"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Granzow, Sandra"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Vidal, Stefan"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-12-10T18:36:53Z"],["dc.date.available","2020-12-10T18:36:53Z"],["dc.date.issued","2017"],["dc.description.abstract","Pseudomonas putida GM4FR is an endophytic bacterium isolated from aerial plant tissues of Festuca rubra L. Functional annotation of the draft genome (7.1 Mb) revealed 6,272 predicted protein-encoding genes. The genome provides insights into the biocontrol and plant growth-promoting potential of P. putida GM4FR."],["dc.identifier.doi","10.1128/genomeA.00086-17"],["dc.identifier.eissn","2169-8287"],["dc.identifier.pmid","28360162"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76772"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.relation.issn","2169-8287"],["dc.title","Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Simon, Meinhard"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-03-12T08:55:52Z"],["dc.date.available","2020-03-12T08:55:52Z"],["dc.date.issued","2018"],["dc.description.abstract","Marine bacteria and archaea are key players in the biogeochemical cycling of nitrogen, carbon, and other elements. One important lineage of marine bacteria is the Roseobacter group. Members of this clade are the most abundant bacteria in marine ecosystems constituting up to 25% of the marine bacterioplankton. They have been detected in various marine habitats from coastal regions to deep-sea sediments and from polar regions to tropical latitudes. These bacteria are physiologically and genetically very versatile. Utilization of several organic and inorganic compounds, sulfur oxidation, aerobic anoxygenic photosynthesis, carbon monoxide oxidation, DMSP demethylation, and production of secondary metabolites are some of the important functional traits found in this clade. Moreover, several isolates are available allowing in-depth analysis of physiological and genetic characteristics. Although the Roseobacter group has been intensively studied in recent years, our understanding of its ecological contributions and the evolutionary processes shaping the genomes of this clade is still rather limited."],["dc.identifier.doi","10.3389/978-2-88945-538-6"],["dc.identifier.isbn","978-2-88945-538-6"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/63325"],["dc.language.iso","en"],["dc.publisher","Frontiers Media SA"],["dc.title","Molecular ecology and genetic diversity of the Roseobacter clade"],["dc.type","book"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","e106707"],["dc.bibliographiccitation.issue","9"],["dc.bibliographiccitation.journal","PLoS One"],["dc.bibliographiccitation.volume","9"],["dc.contributor.author","Ilmberger, Nele"],["dc.contributor.author","Güllert, Simon"],["dc.contributor.author","Dannenberg, Joana"],["dc.contributor.author","Rabausch, Ulrich"],["dc.contributor.author","Torres, Jeremy"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Alawi, Malik"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Chow, Jennifer"],["dc.contributor.author","Turaev, Dimitrij"],["dc.contributor.author","Rattei, Thomas"],["dc.contributor.author","Schmeisser, Christel"],["dc.contributor.author","Salomon, Jesper"],["dc.contributor.author","Olsen, Peter B."],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Grundhoff, Adam"],["dc.contributor.author","Borchert, Martin S."],["dc.contributor.author","Streit, Wolfgang R."],["dc.date.accessioned","2018-11-07T09:35:20Z"],["dc.date.available","2018-11-07T09:35:20Z"],["dc.date.issued","2014"],["dc.description.abstract","A phylogenetic and metagenomic study of elephant feces samples (derived from a three-weeks-old and a six-years-old Asian elephant) was conducted in order to describe the microbiota inhabiting this large land-living animal. The microbial diversity was examined via 16S rRNA gene analysis. We generated more than 44,000 GS-FLX+454 reads for each animal. For the baby elephant, 380 operational taxonomic units (OTUs) were identified at 97% sequence identity level; in the six-years-old animal, close to 3,000 OTUs were identified, suggesting high microbial diversity in the older animal. In both animals most OTUs belonged to Bacteroidetes and Firmicutes. Additionally, for the baby elephant a high number of Proteobacteria was detected. A metagenomic sequencing approach using Illumina technology resulted in the generation of 1.1 Gbp assembled DNA in contigs with a maximum size of 0.6 Mbp. A KEGG pathway analysis suggested high metabolic diversity regarding the use of polymers and aromatic and non-aromatic compounds. In line with the high phylogenetic diversity, a surprising and not previously described biodiversity of glycoside hydrolase (GH) genes was found. Enzymes of 84 GH families were detected. Polysaccharide utilization loci (PULs), which are found in Bacteroidetes, were highly abundant in the dataset; some of these comprised cellulase genes. Furthermore the highest coverage for GH5 and GH9 family enzymes was detected for Bacteroidetes, suggesting that bacteria of this phylum are mainly responsible for the degradation of cellulose in the Asian elephant. Altogether, this study delivers insight into the biomass conversion by one of the largest plant-fed and land-living animals."],["dc.identifier.doi","10.1371/journal.pone.0106707"],["dc.identifier.isi","000342030300036"],["dc.identifier.pmid","25208077"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/10859"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/32360"],["dc.language.iso","en"],["dc.notes.intern","Merged from goescholar"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.relation.issn","1932-6203"],["dc.rights","CC BY 3.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/3.0"],["dc.title","A Comparative Metagenome Survey of the Fecal Microbiota of a Breast- and a Plant-Fed Asian Elephant Reveals an Unexpectedly High Diversity of Glycoside Hydrolase Family Enzymes"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","295"],["dc.bibliographiccitation.lastpage","295"],["dc.contributor.author","Tiede, Julia"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Traugott, Michael"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Tscharntke, Teja"],["dc.contributor.author","Ebeling, Anne"],["dc.contributor.author","Scherber, Christoph"],["dc.date.accessioned","2017-11-29T15:56:52Z"],["dc.date.available","2017-11-29T15:56:52Z"],["dc.date.issued","2016"],["dc.fs.externid","751110"],["dc.fs.pkfprnr","11732"],["dc.identifier.fs","623505"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/11247"],["dc.language.iso","en"],["dc.notes.intern","FactScience-Import"],["dc.notes.status","final"],["dc.publisher","Gesellschaft für Ökologie"],["dc.publisher.place","Marburg"],["dc.relation.conference","Annual Meeting of the Ecological Society of Germany, Austria and Switzerland"],["dc.relation.eventend","2016-09-09"],["dc.relation.eventlocation","Marburg"],["dc.relation.eventstart","2016-11-05"],["dc.relation.ispartof","150 years of Ecology - lessons for the future"],["dc.relation.ispartofseries","Verhandlungen der Gesellschaft für Ökologie;46"],["dc.relation.issn","0171-1113"],["dc.title","Plant diversity affects multitrophic interactions in an experimental grassland"],["dc.type","conference_paper"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","unknown"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","fiv145"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","FEMS Microbiology Ecology"],["dc.bibliographiccitation.volume","92"],["dc.contributor.author","Kanukollu, Saranya"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Herber, Janina"],["dc.contributor.author","Billerbeck, Sara"],["dc.contributor.author","Lucas, Judith"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Simon, Meinhard"],["dc.contributor.author","Cypionka, Heribert"],["dc.contributor.author","Engelen, Bert"],["dc.date.accessioned","2018-11-07T10:20:55Z"],["dc.date.available","2018-11-07T10:20:55Z"],["dc.date.issued","2016"],["dc.description.abstract","The Roseobacter group is one of the predominant lineages in the marine environment. While most investigations focus on pelagic roseobacters, the distribution and metabolic potential of benthic representatives is less understood. In this study, the diversity of the Roseobacter group was characterized in sediment and water samples along the German/Scandinavian North Sea coast by 16S rRNA gene analysis and cultivation-based methods. Molecular analysis indicated an increasing diversity between communities of the Roseobacter group from the sea surface to the seafloor and revealed distinct compositions of free-living and attached fractions. Culture media containing dimethyl sulfide (DMS), dimethyl sulfonium propionate (DMSP) or dimethyl sulfoxide (DMSO) stimulated growth of roseobacters showing highest most probable numbers (MPN) in DMSO-containing dilutions of surface sediments (2.1 x 10(7) roseobacters cm(-3)). Twenty roseobacters (12 from sediments) were isolated from DMSP-and DMS-containing cultures. Sequences of the isolates represented 0.04% of all Bacteria and 4.7% of all roseobacters in the pyrosequencing dataset from sediments. Growth experiments with the isolate Shimia sp. SK013 indicated that benthic roseobacters are able to switch between aerobic and anaerobic utilization of organic sulfur compounds. This response to changing redox conditions might be an adaptation to specific environmental conditions on particles and in sediments."],["dc.identifier.doi","10.1093/femsec/fiv145"],["dc.identifier.isi","000371249300003"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/41977"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.relation.issn","1574-6941"],["dc.relation.issn","0168-6496"],["dc.title","Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","16063"],["dc.bibliographiccitation.issue","7"],["dc.bibliographiccitation.journal","Nature Microbiology"],["dc.bibliographiccitation.volume","1"],["dc.contributor.author","Billerbeck, Sara"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Voget, Sonja"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Giebel, Helge-Ansgar"],["dc.contributor.author","Brinkhoff, Thorsten"],["dc.contributor.author","Gram, Lone"],["dc.contributor.author","Jeffrey, Wade H."],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Simon, Meinhard"],["dc.date.accessioned","2020-12-10T18:09:31Z"],["dc.date.available","2020-12-10T18:09:31Z"],["dc.date.issued","2016"],["dc.description.abstract","The identification and functional characterization of microbial communities remains a prevailing topic in microbial oceanography as information on environmentally relevant pelagic prokaryotes is still limited. The Roseobacter group, an abundant lineage of marine Alphaproteobacteria, can constitute large proportions of the bacterioplankton. Roseobacters also occur associated with eukaryotic organisms and possess streamlined as well as larger genomes from 2.2 to >5 Mpb. Here, we show that one pelagic cluster of this group, CHAB-I-5, occurs globally from tropical to polar regions and accounts for up to 22% of the active North Sea bacterioplankton in the summer. The first sequenced genome of a CHAB-I-5 organism comprises 3.6 Mbp and exhibits features of an oligotrophic lifestyle. In a metatranscriptome of North Sea surface waters, 98% of the encoded genes were present, and genes encoding various ABC transporters, glutamate synthase and CO oxidation were particularly upregulated. Phylogenetic gene content analyses of 41 genomes of the Roseobacter group revealed a unique cluster of pelagic organisms distinct from other lineages of this group, highlighting the adaptation to life in nutrient-depleted environments."],["dc.identifier.doi","10.1038/nmicrobiol.2016.63"],["dc.identifier.eissn","2058-5276"],["dc.identifier.isi","000383605700008"],["dc.identifier.pmid","27572966"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/73677"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.relation.issn","2058-5276"],["dc.title","Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","1185"],["dc.bibliographiccitation.journal","Frontiers in Microbiology"],["dc.bibliographiccitation.volume","9"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Simon, Meinhard"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-04-28T12:41:21Z"],["dc.date.available","2020-04-28T12:41:21Z"],["dc.date.issued","2018"],["dc.identifier.doi","10.3389/fmicb.2018.01185"],["dc.identifier.pmid","29910792"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/64447"],["dc.language.iso","en"],["dc.relation.issn","1664-302X"],["dc.title","Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.subtype","editorial_ja"],["dspace.entity.type","Publication"]]