Daniel, Rolf

[["dc.bibliographiccitation.issue","15"],["dc.bibliographiccitation.journal","Microbiology resource announcements"],["dc.bibliographiccitation.volume","9"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Aßmann, Nils"],["dc.contributor.author","Wicke, Dennis"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.editor","Stewart, Frank J."],["dc.date.accessioned","2020-12-10T18:37:06Z"],["dc.date.available","2020-12-10T18:37:06Z"],["dc.date.issued","2020"],["dc.identifier.doi","10.1128/MRA.00201-20"],["dc.identifier.eissn","2576-098X"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76840"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","Metagenomes of Wastewater at Different Treatment Stages in Central Germany"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","577"],["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","Biotechnology Letters"],["dc.bibliographiccitation.lastpage","587"],["dc.bibliographiccitation.volume","39"],["dc.contributor.author","Dukunde, Amelie"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Lu, Mingji"],["dc.contributor.author","Brady, Silja"],["dc.contributor.author","Daniel, Rolf"],["dc.date.accessioned","2018-11-07T10:25:41Z"],["dc.date.available","2018-11-07T10:25:41Z"],["dc.date.issued","2017"],["dc.description.abstract","Objectives To investigate the properties of a novel metagenome-derived member of the hormone-sensitive lipase family of lipolytic enzymes. Results A forest soil metagenome-derived gene encoding an esterase (Est06) belonging to the hormone-sensitive lipase family of lipolytic enzymes was subcloned, heterologously expressed and characterized. Est06 is a polypeptide of 295 amino acids with a molecular mass of 31 kDa. The deduced protein sequence shares 61% similarity with a hypothetical protein from the marine symbiont Candidatus Entotheonella sp. TSY1. Purified Est06 exhibited high affinity for acyl esters with short-chain fatty acids, and showed optimum activity with p-nitrophenyl valerate (C5). Maximum enzymatic activity was at 50 degrees C and pH 7. Est06 exhibited high stability at moderate temperatures by retaining all of its catalytic activity below 30 degrees C over 13 days. Additionally, Est06 displayed high stability between pH 5 and 9. Esterase activity was not inhibited by metal ions or detergents, although organic solvents decreased activity. Conclusions The combination of Est06 properties place it among novel biocatalysts that have potential for industrial use including low temperature applications."],["dc.description.sponsorship","DFG (German Science Foundation) [GRK 1086]"],["dc.identifier.doi","10.1007/s10529-016-2282-1"],["dc.identifier.isi","000398114000014"],["dc.identifier.pmid","28044227"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/42906"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","PUB_WoS_Import"],["dc.publisher","Springer"],["dc.relation.issn","1573-6776"],["dc.relation.issn","0141-5492"],["dc.title","A novel, versatile family IV carboxylesterase exhibits high stability and activity in a broad pH spectrum"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","S0378112721007994"],["dc.bibliographiccitation.firstpage","119709"],["dc.bibliographiccitation.journal","Forest Ecology and Management"],["dc.bibliographiccitation.volume","502"],["dc.contributor.author","Likulunga, Likulunga Emmanuel"],["dc.contributor.author","Rivera Pérez, Carmen Alicia"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Polle, Andrea"],["dc.date.accessioned","2021-12-01T09:23:34Z"],["dc.date.available","2021-12-01T09:23:34Z"],["dc.date.issued","2021"],["dc.identifier.doi","10.1016/j.foreco.2021.119709"],["dc.identifier.pii","S0378112721007994"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/94692"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-478"],["dc.relation.issn","0378-1127"],["dc.title","Tree species composition and soil properties in pure and mixed beech-conifer stands drive soil fungal communities"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","2085"],["dc.bibliographiccitation.issue","7"],["dc.bibliographiccitation.journal","Biogeosciences"],["dc.bibliographiccitation.lastpage","2106"],["dc.bibliographiccitation.volume","17"],["dc.contributor.author","Fussmann, Dario"],["dc.contributor.author","von Hoyningen-Huene, Avril Jean Elisabeth"],["dc.contributor.author","Reimer, Andreas"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Babková, Hana"],["dc.contributor.author","Peticzka, Robert"],["dc.contributor.author","Maier, Andreas"],["dc.contributor.author","Arp, Gernot"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Meister, Patrick"],["dc.date.accessioned","2020-04-28T12:42:41Z"],["dc.date.available","2020-04-28T12:42:41Z"],["dc.date.issued","2020"],["dc.description.abstract","Despite advances regarding the microbial and organic-molecular impact on nucleation, the formation of dolomite in sedimentary environments is still incompletely understood. Since 1960, apparent dolomite formation has been reported from mud sediments of the shallow, oligohaline and alkaline Lake Neusiedl, Austria. To trace potential dolomite formation or diagenetic alteration processes in its deposits, lake water samples and sediment cores were analyzed with respect to sediment composition, hydrochemistry and bacterial community composition. Sediments comprise 20 cm of homogenous mud with 60 wt % carbonate, which overlies dark-laminated consolidated mud containing 50 wt % carbonate and plant debris. Hydrochemical measurements reveal a shift from oxic lake water with pH 9.0 to anoxic sediment pore water with pH 7.5. A decrease in SO42- with a concomitant increase in ΣH2S and NH4+ from 0 to 15 cm core depth indicates anaerobic heterotrophic decomposition, including sulfate reduction. The bacterial community composition reflects the zonation indicated by the pore water chemistry, with a distinct increase in fermentative taxa below 15 cm core depth. The water column is highly supersaturated with respect to (disordered) dolomite and calcite, whereas saturation indices of both minerals rapidly approach zero in the sediment. Notably, the relative proportions of different authigenic carbonate phases and their stoichiometric compositions remain constant with increasing core depth. Hence, evidence for Ca–Mg carbonate formation or ripening to dolomite is lacking within the sediment of Lake Neusiedl. As a consequence, precipitation of high-magnesium calcite (HMC) and protodolomite does not occur in association with anoxic sediment and sulfate-reducing conditions. Instead, analytical data for Lake Neusiedl suggest that authigenic HMC and protodolomite precipitate from the supersaturated, well-mixed aerobic water column. This observation supports an alternative concept to dolomite formation in anoxic sediments, comprising Ca–Mg carbonate precipitation in the water column under aerobic and alkaline conditions."],["dc.identifier.doi","10.5194/bg-17-2085-2020"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/17461"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/64457"],["dc.language.iso","en"],["dc.relation.issn","1726-4189"],["dc.title","Authigenic formation of Ca-Mg carbonates in the shallow alkaline Lake Neusiedl, Austria"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1511"],["dc.bibliographiccitation.issue","10"],["dc.bibliographiccitation.journal","Nature Ecology & Evolution"],["dc.bibliographiccitation.lastpage","1519"],["dc.bibliographiccitation.volume","1"],["dc.contributor.author","Barnes, Andrew D."],["dc.contributor.author","Allen, Kara"],["dc.contributor.author","Kreft, Holger"],["dc.contributor.author","Corre, Marife D."],["dc.contributor.author","Jochum, Malte"],["dc.contributor.author","Veldkamp, Edzo"],["dc.contributor.author","Clough, Yann"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Darras, Kevin"],["dc.contributor.author","Denmead, Lisa H."],["dc.contributor.author","Farikhah Haneda, Noor"],["dc.contributor.author","Hertel, Dietrich"],["dc.contributor.author","Knohl, Alexander"],["dc.contributor.author","Kotowska, Martyna M."],["dc.contributor.author","Kurniawan, Syahrul"],["dc.contributor.author","Meijide, Ana"],["dc.contributor.author","Rembold, Katja"],["dc.contributor.author","Edho Prabowo, Walesa"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Tscharntke, Teja"],["dc.contributor.author","Brose, Ulrich"],["dc.date.accessioned","2018-03-13T14:12:09Z"],["dc.date.available","2018-03-13T14:12:09Z"],["dc.date.issued","2017"],["dc.description.abstract","The conversion of tropical rainforest to agricultural systems such as oil palm alters biodiversity across a large range of interacting taxa and trophic levels. Yet, it remains unclear how direct and cascading effects of land-use change simultaneously drive ecological shifts. Combining data from a multi-taxon research initiative in Sumatra, Indonesia, we show that direct and cascading land-use effects alter biomass and species richness of taxa across trophic levels ranging from microorganisms to birds. Tropical land use resulted in increases in biomass and species richness via bottom-up cascading effects, but reductions via direct effects. When considering direct and cascading effects together, land use was found to reduce biomass and species richness, with increasing magnitude at higher trophic levels. Our analyses disentangle the multifaceted effects of land-use change on tropical ecosystems, revealing that biotic interactions on broad taxonomic scales influence the ecological outcome of anthropogenic perturbations to natural ecosystems."],["dc.identifier.doi","10.1038/s41559-017-0275-7"],["dc.identifier.pmid","29185508"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/13011"],["dc.language.iso","en"],["dc.notes.status","final"],["dc.relation","SFB 990: Ökologische und sozioökonomische Funktionen tropischer Tieflandregenwald-Transformationssysteme (Sumatra, Indonesien)"],["dc.relation","SFB 990 | A | A03: Untersuchung von Land-Atmosphäre Austauschprozesse in Landnutzungsänderungs-Systemen"],["dc.relation","SFB 990 | A | A05: Optimierung des Nährstoffmanagements in Ölpalmplantagen und Hochrechnung plot-basierter Treibhausgasflüsse auf die Landschaftsebene transformierter Regenwälder"],["dc.relation","SFB 990 | B | B01: Structure, stability and functioning of macro-invertebrate communities in rainforest transformation systems in Sumatra (Indonesia)"],["dc.relation","SFB 990 | B | B02: Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)"],["dc.relation","SFB 990 | B | B04: Pflanzenproduktivität und Ressourcenaufteilung im Wurzelraum entlang von Gradienten tropischer Landnutzungsintensität und Baumartenvielfalt"],["dc.relation","SFB 990 | B | B06: Taxonomische, funktionelle, phylogenetische und biogeographische Diversität vaskulärer Pflanzen in Regenwald-Transformationssystemen auf Sumatra (Indonesien)"],["dc.relation","SFB 990 | B | B09: Oberirdische Biodiversitätsmuster und Prozesse in Regenwaldtransformations-Landschaften"],["dc.relation.eissn","2397-334X"],["dc.relation.orgunit","Abteilung Bioklimatologie"],["dc.subject.gro","sfb990_journalarticles"],["dc.title","Direct and cascading impacts of tropical land-use change on multi-trophic biodiversity"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","840"],["dc.bibliographiccitation.issue","10"],["dc.bibliographiccitation.journal","Geomicrobiology Journal"],["dc.bibliographiccitation.lastpage","850"],["dc.bibliographiccitation.volume","34"],["dc.contributor.author","Reyes, Carolina"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Thürmer, Andrea"],["dc.contributor.author","Kulkarni, Ajinkya"],["dc.contributor.author","Lipka, Marko"],["dc.contributor.author","Sztejrenszus, Saar Y."],["dc.contributor.author","Böttcher, Michael E."],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Friedrich, Michael W."],["dc.date.accessioned","2020-12-10T18:14:46Z"],["dc.date.available","2020-12-10T18:14:46Z"],["dc.date.issued","2017"],["dc.identifier.doi","10.1080/01490451.2017.1281360"],["dc.identifier.eissn","1521-0529"],["dc.identifier.issn","0149-0451"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/74612"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","Potentially Active Iron, Sulfur, and Sulfate Reducing Bacteria in Skagerrak and Bothnian Bay Sediments"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1"],["dc.bibliographiccitation.journal","Archaea"],["dc.bibliographiccitation.lastpage","9"],["dc.bibliographiccitation.volume","2018"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Soh, Melissa"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Seedorf, Henning"],["dc.date.accessioned","2020-12-10T18:37:41Z"],["dc.date.available","2020-12-10T18:37:41Z"],["dc.date.issued","2018"],["dc.identifier.doi","10.1155/2018/7609847"],["dc.identifier.eissn","1472-3654"],["dc.identifier.issn","1472-3646"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/77066"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","Comparative Genomic Analysis of Members of the Genera Methanosphaera and Methanobrevibacter Reveals Distinct Clades with Specific Potential Metabolic Functions"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","55"],["dc.bibliographiccitation.journal","Organic Geochemistry"],["dc.bibliographiccitation.lastpage","62"],["dc.bibliographiccitation.volume","55"],["dc.contributor.author","Blumenberg, Martin"],["dc.contributor.author","Arp, Gernot"],["dc.contributor.author","Reitner, Joachim"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Thiel, Volker"],["dc.date.accessioned","2018-11-07T09:28:24Z"],["dc.date.available","2018-11-07T09:28:24Z"],["dc.date.issued","2013"],["dc.description.abstract","Bacteriohopanepolyols (BHPs) are lipids of distinct bacterial groups and are, along with geohopanoids as their diagenetic products, ubiquitous in microbial mats, sediments, soils and oil. Among BHP-producing bacteria, Cyanobacteria are of special interest since occurrences of C-2 methylated and other geohopanoids are interpreted as signals of oxygenic photoautotrophs in the early oceans. However, many questions, with respect to the source and function of hopanoids, remain open. Cyanobacterial mats are complex systems in terms of biogeochemical zones and hence, harbor phylogenetically and metabolically diverse photoautotrophic and heterotrophic microorganisms. Whereas Cyanobacteria are key microbial players for carbon fixation in these mat systems, most other bacterial and archaeal groups feed on their metabolic products and/or perform anoxygenic photosynthesis in deeper low-light regimes. We have analyzed the abundance and distribution of BHPs in distinct layers of a stratified mat from a hypersaline lake on Kiritimati. Suites of BHPs were observed, with the majority probably originating from (proteo-) bacteria thriving in the deeper layers of the mat and not in upper layers where mat-forming Cyanobacteria are prevalent. Interestingly, the BHPs in the deepest layer include C-2 methylated structures, which likely do not originate from Cyanobacteria, but rather from alpha-Proteobacteria thriving at the redoxcline of this stratified microbial system. (C) 2012 Elsevier Ltd. All rights reserved."],["dc.identifier.doi","10.1016/j.orggeochem.2012.11.004"],["dc.identifier.isi","000316300000007"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/30763"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.relation.issn","0146-6380"],["dc.title","Bacteriohopanepolyols in a stratified cyanobacterial mat from Kiritimati (Christmas Island, Kiribati)"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1"],["dc.bibliographiccitation.journal","Geomicrobiology Journal"],["dc.bibliographiccitation.lastpage","19"],["dc.contributor.author","Fussmann, Dario"],["dc.contributor.author","von Hoyningen-Huene, Avril J. E."],["dc.contributor.author","Reimer, Andreas"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Karius, Volker"],["dc.contributor.author","Riechelmann, Sylvia"],["dc.contributor.author","Pederson, Chelsea"],["dc.contributor.author","Swart, Peter K."],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Arp, Gernot"],["dc.date.accessioned","2022-06-01T09:39:17Z"],["dc.date.available","2022-06-01T09:39:17Z"],["dc.date.issued","2022"],["dc.identifier.doi","10.1080/01490451.2022.2070689"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/108431"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-572"],["dc.relation.eissn","1521-0529"],["dc.relation.issn","0149-0451"],["dc.title","Decoupling of Pore Water Chemistry, Bacterial Community Profiles, and Carbonate Mud Diagenesis in a Land-Locked Pool on Aldabra (Seychelles, Indian Ocean)"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","316"],["dc.bibliographiccitation.issue","3-4"],["dc.bibliographiccitation.journal","Geomicrobiology Journal"],["dc.bibliographiccitation.lastpage","331"],["dc.bibliographiccitation.volume","32"],["dc.contributor.author","Schneider, Dominik"],["dc.contributor.author","Reimer, Andreas"],["dc.contributor.author","Hahlbrock, Angelina"],["dc.contributor.author","Arp, Gernot"],["dc.contributor.author","Daniel, Rolf"],["dc.date.accessioned","2018-11-07T09:59:36Z"],["dc.date.available","2018-11-07T09:59:36Z"],["dc.date.issued","2015"],["dc.description.abstract","Calcification of freshwater streams and the involvement of microorganisms in this process are still not fully understood. Here, we report on the metagenomic and metatranscriptomic analyses of bacterial community structures derived from an actively calcifying karst water creek biofilm and underlying tufa by employing next-generation sequencing technologies.The persistent and metabolically active bacterial communities were assessed by DNA-based and RNA-based 16S rRNA gene sequence analysis, respectively. We identified filamentous Cyanobacteria belonging to the Oscillatoriales as the predominant bacterial microorganisms in the biofilm. Cyanobacteria were accompanied by a high diversity of mainly aerobic members affiliated to different bacterial phyla. The second most abundant phylum was Proteobacteria, represented by the classes Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, and Deltaproteobacteria. In addition, Chloroflexi, Planctomycetes, Actinobacteria, Acidobacteria, Bacteroidetes, Spirochaetes, and Verrucomicrobia were present in higher abundances (>0.5%). Several of these phyla included potentially novel subgroups. The tufa stromatolite carbonate one centimeter below the surface exhibited a similar prokaryotic community as the superficial biofilm but showed a lower abundance of Cyanobacteria and a more diverse microbial community. We obtained insights into the in situ microbial metabolism by employing directed sequencing of enriched mRNA (cDNA) and subsequent taxonomic and functional analysis of biofilm-derived reads. High activities in photosynthesis, carbon and protein metabolism were indicated."],["dc.description.sponsorship","Deutsche Forschungsgemeinschaft [DFG-FOR 571, DA 374/5-2, AR335/5-3]"],["dc.identifier.doi","10.1080/01490451.2014.907376"],["dc.identifier.isi","000352349600011"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/37627"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.relation.issn","1521-0529"],["dc.relation.issn","0149-0451"],["dc.title","Metagenomic and Metatranscriptomic Analyses of Bacterial Communities Derived From a Calcifying Karst Water Creek Biofilm and Tufa"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dspace.entity.type","Publication"]]