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Hauschild, Anne-Christin
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Hauschild, Anne-Christin
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Hauschild, Anne-Christin
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Hauschild, A.-C.
Hauschild, A. C.
Hauschild, A.
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2017-07-05Journal Article Research Paper [["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","Journal of Integrative Bioinformatics"],["dc.bibliographiccitation.volume","14"],["dc.contributor.author","Barbosa, Eudes"],["dc.contributor.author","Röttger, Richard"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","de Castro Soares, Siomar"],["dc.contributor.author","Böcker, Sebastian"],["dc.contributor.author","Azevedo, Vasco"],["dc.contributor.author","Baumbach, Jan"],["dc.date.accessioned","2021-09-17T08:41:11Z"],["dc.date.available","2021-09-17T08:41:11Z"],["dc.date.issued","2017-07-05"],["dc.description.abstract","Distinct bacteria are able to cope with highly diverse lifestyles; for instance, they can be free living or host-associated. Thus, these organisms must possess a large and varied genomic arsenal to withstand different environmental conditions. To facilitate the identification of genomic features that might influence bacterial adaptation to a specific niche, we introduce LifeStyle-Specific-Islands (LiSSI). LiSSI combines evolutionary sequence analysis with statistical learning (Random Forest with feature selection, model tuning and robustness analysis). In summary, our strategy aims to identify conserved consecutive homology sequences (islands) in genomes and to identify the most discriminant islands for each lifestyle."],["dc.identifier.doi","10.1515/jib-2017-0010"],["dc.identifier.pmid","28678736"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89610"],["dc.language.iso","en"],["dc.relation.issn","1613-4516"],["dc.title","LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2012-10-16Journal Article Research Paper [["dc.bibliographiccitation.firstpage","733"],["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","Metabolites"],["dc.bibliographiccitation.lastpage","755"],["dc.bibliographiccitation.volume","2"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Schneider, Till"],["dc.contributor.author","Pauling, Josch"],["dc.contributor.author","Rupp, Kathrin"],["dc.contributor.author","Jang, Mi"],["dc.contributor.author","Baumbach, Jörg Ingo"],["dc.contributor.author","Baumbach, Jan"],["dc.date.accessioned","2021-09-17T08:41:31Z"],["dc.date.available","2021-09-17T08:41:31Z"],["dc.date.issued","2012-10-16"],["dc.description.abstract","Ion mobility spectrometry combined with multi-capillary columns (MCC/IMS) is a well known technology for detecting volatile organic compounds (VOCs). We may utilize MCC/IMS for scanning human exhaled air, bacterial colonies or cell lines, for example. Thereby we gain information about the human health status or infection threats. We may further study the metabolic response of living cells to external perturbations. The instrument is comparably cheap, robust and easy to use in every day practice. However, the potential of the MCC/IMS methodology depends on the successful application of computational approaches for analyzing the huge amount of emerging data sets. Here, we will review the state of the art and highlight existing challenges. First, we address methods for raw data handling, data storage and visualization. Afterwards we will introduce de-noising, peak picking and other pre-processing approaches. We will discuss statistical methods for analyzing correlations between peaks and diseases or medical treatment. Finally, we study up-to-date machine learning techniques for identifying robust biomarker molecules that allow classifying patients into healthy and diseased groups. We conclude that MCC/IMS coupled with sophisticated computational methods has the potential to successfully address a broad range of biomedical questions. While we can solve most of the data pre-processing steps satisfactorily, some computational challenges with statistical learning and model validation remain."],["dc.identifier.doi","10.3390/metabo2040733"],["dc.identifier.pmid","24957760"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89614"],["dc.language.iso","en"],["dc.relation.issn","2218-1989"],["dc.title","Computational methods for metabolomic data analysis of ion mobility spectrometry data-reviewing the state of the art"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2020Preprint [["dc.contributor.author","Hufsky, Franziska"],["dc.contributor.author","Lamkiewicz, Kevin"],["dc.contributor.author","Almeida, Alexandre"],["dc.contributor.author","Aouacheria, Abdel"],["dc.contributor.author","Arighi, Cecilia"],["dc.contributor.author","Bateman, Alex"],["dc.contributor.author","Baumbach, Jan"],["dc.contributor.author","Beerenwinkel, Niko"],["dc.contributor.author","Brandt, Christian"],["dc.contributor.author","Cacciabue, Marco"],["dc.contributor.author","Chuguransky, Sara"],["dc.contributor.author","Drechsel, Oliver"],["dc.contributor.author","Finn, Robert D."],["dc.contributor.author","Fritz, Adrian"],["dc.contributor.author","Fuchs, Stephan"],["dc.contributor.author","Hattab, Georges"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Heider, Dominik"],["dc.contributor.author","Hoffmann, Marie"],["dc.contributor.author","Hölzer, Martin"],["dc.contributor.author","Hoops, Stefan"],["dc.contributor.author","Kaderali, Lars"],["dc.contributor.author","Kalvari, Ioanna"],["dc.contributor.author","von Kleist, Max"],["dc.contributor.author","Kmiecinski, René"],["dc.contributor.author","Kühnert, Denise"],["dc.contributor.author","Lasso, Gorka"],["dc.contributor.author","Libin, Pieter"],["dc.contributor.author","List, Markus"],["dc.contributor.author","Löchel, Hannah F."],["dc.contributor.author","Martin, Maria J."],["dc.contributor.author","Martin, Roman"],["dc.contributor.author","Matschinske, Julian"],["dc.contributor.author","McHardy, Alice C."],["dc.contributor.author","Mendes, Pedro"],["dc.contributor.author","Mistry, Jaina"],["dc.contributor.author","Navratil, Vincent"],["dc.contributor.author","Nawrocki, Eric"],["dc.contributor.author","O'Toole, Áine Niamh"],["dc.contributor.author","Palacios-Ontiveros, Nancy"],["dc.contributor.author","Petrov, Anton I."],["dc.contributor.author","Rangel-Piñeros, Guillermo"],["dc.contributor.author","Redaschi, Nicole"],["dc.contributor.author","Reimering, Susanne"],["dc.contributor.author","Reinert, Knut"],["dc.contributor.author","Reyes, Alejandro"],["dc.contributor.author","Richardson, Lorna"],["dc.contributor.author","Robertson, David L."],["dc.contributor.author","Sadegh, Sepideh"],["dc.contributor.author","Singer, Joshua B."],["dc.contributor.author","Theys, Kristof"],["dc.contributor.author","Upton, Chris"],["dc.contributor.author","Welzel, Marius"],["dc.contributor.author","Williams, Lowri"],["dc.contributor.author","Marz, Manja"],["dc.date.accessioned","2021-09-17T08:41:15Z"],["dc.date.available","2021-09-17T08:41:15Z"],["dc.date.issued","2020"],["dc.identifier.doi","10.20944/preprints202005.0376.v1"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89611"],["dc.title","Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research"],["dc.type","preprint"],["dc.type.internalPublication","no"],["dspace.entity.type","Publication"]]Details DOI2014-03Journal Article Research Paper [["dc.bibliographiccitation.artnumber","012001"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","Journal of breath research"],["dc.bibliographiccitation.volume","8"],["dc.contributor.author","Eckel, Sandrah P."],["dc.contributor.author","Baumbach, Jan"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.date.accessioned","2021-09-17T08:40:34Z"],["dc.date.available","2021-09-17T08:40:34Z"],["dc.date.issued","2014-03"],["dc.identifier.doi","10.1088/1752-7155/8/1/012001"],["dc.identifier.pmid","24565974"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89602"],["dc.language.iso","en"],["dc.relation.eissn","1752-7163"],["dc.relation.issn","1752-7155"],["dc.title","On the importance of statistics in breath analysis--hope or curse?"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2015-06-10Journal Article Research Paper [["dc.bibliographiccitation.firstpage","344"],["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","Metabolites"],["dc.bibliographiccitation.lastpage","363"],["dc.bibliographiccitation.volume","5"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Frisch, Tobias"],["dc.contributor.author","Baumbach, Jörg Ingo"],["dc.contributor.author","Baumbach, Jan"],["dc.date.accessioned","2021-09-17T08:41:42Z"],["dc.date.available","2021-09-17T08:41:42Z"],["dc.date.issued","2015-06-10"],["dc.description.abstract","Computational breath analysis is a growing research area aiming at identifying volatile organic compounds (VOCs) in human breath to assist medical diagnostics of the next generation. While inexpensive and non-invasive bioanalytical technologies for metabolite detection in exhaled air and bacterial/fungal vapor exist and the first studies on the power of supervised machine learning methods for profiling of the resulting data were conducted, we lack methods to extract hidden data features emerging from confounding factors. Here, we present Carotta, a new cluster analysis framework dedicated to uncovering such hidden substructures by sophisticated unsupervised statistical learning methods. We study the power of transitivity clustering and hierarchical clustering to identify groups of VOCs with similar expression behavior over most patient breath samples and/or groups of patients with a similar VOC intensity pattern. This enables the discovery of dependencies between metabolites. On the one hand, this allows us to eliminate the effect of potential confounding factors hindering disease classification, such as smoking. On the other hand, we may also identify VOCs associated with disease subtypes or concomitant diseases. Carotta is an open source software with an intuitive graphical user interface promoting data handling, analysis and visualization. The back-end is designed to be modular, allowing for easy extensions with plugins in the future, such as new clustering methods and statistics. It does not require much prior knowledge or technical skills to operate. We demonstrate its power and applicability by means of one artificial dataset. We also apply Carotta exemplarily to a real-world example dataset on chronic obstructive pulmonary disease (COPD). While the artificial data are utilized as a proof of concept, we will demonstrate how Carotta finds candidate markers in our real dataset associated with confounders rather than the primary disease (COPD) and bronchial carcinoma (BC). Carotta is publicly available at http://carotta.compbio.sdu.dk [1]."],["dc.identifier.doi","10.3390/metabo5020344"],["dc.identifier.pmid","26065494"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89616"],["dc.language.iso","en"],["dc.relation.issn","2218-1989"],["dc.title","Carotta: Revealing Hidden Confounder Markers in Metabolic Breath Profiles"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2022Journal Article [["dc.bibliographiccitation.firstpage","2278"],["dc.bibliographiccitation.issue","8"],["dc.bibliographiccitation.journal","Bioinformatics"],["dc.bibliographiccitation.lastpage","2286"],["dc.bibliographiccitation.volume","38"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Lemanczyk, Marta"],["dc.contributor.author","Matschinske, Julian"],["dc.contributor.author","Frisch, Tobias"],["dc.contributor.author","Zolotareva, Olga"],["dc.contributor.author","Holzinger, Andreas"],["dc.contributor.author","Baumbach, Jan"],["dc.contributor.author","Heider, Dominik"],["dc.contributor.editor","Wren, Jonathan"],["dc.date.accessioned","2022-06-08T07:59:06Z"],["dc.date.available","2022-06-08T07:59:06Z"],["dc.date.issued","2022"],["dc.description.abstract","Abstract Motivation Limited data access has hindered the field of precision medicine from exploring its full potential, e.g. concerning machine learning and privacy and data protection rules. Our study evaluates the efficacy of federated Random Forests (FRF) models, focusing particularly on the heterogeneity within and between datasets. We addressed three common challenges: (i) number of parties, (ii) sizes of datasets and (iii) imbalanced phenotypes, evaluated on five biomedical datasets. Results The FRF outperformed the average local models and performed comparably to the data-centralized models trained on the entire data. With an increasing number of models and decreasing dataset size, the performance of local models decreases drastically. The FRF, however, do not decrease significantly. When combining datasets of different sizes, the FRF vastly improve compared to the average local models. We demonstrate that the FRF remain more robust and outperform the local models by analyzing different class-imbalances. Our results support that FRF overcome boundaries of clinical research and enables collaborations across institutes without violating privacy or legal regulations. Clinicians benefit from a vast collection of unbiased data aggregated from different geographic locations, demographics and other varying factors. They can build more generalizable models to make better clinical decisions, which will have relevance, especially for patients in rural areas and rare or geographically uncommon diseases, enabling personalized treatment. In combination with secure multi-party computation, federated learning has the power to revolutionize clinical practice by increasing the accuracy and robustness of healthcare AI and thus paving the way for precision medicine. Availability and implementation The implementation of the federated random forests can be found at https://featurecloud.ai/. Supplementary information Supplementary data are available at Bioinformatics online."],["dc.identifier.doi","10.1093/bioinformatics/btac065"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/110631"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-575"],["dc.relation.eissn","1460-2059"],["dc.relation.issn","1367-4803"],["dc.title","Federated Random Forests can improve local performance of predictive models for various healthcare applications"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dspace.entity.type","Publication"]]Details DOI2013-04-02Journal Article Research Paper [["dc.bibliographiccitation.firstpage","218"],["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","Journal of Integrative Bioinformatics"],["dc.bibliographiccitation.volume","10"],["dc.contributor.author","Schneider, Till"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Baumbach, Jörg Ingo"],["dc.contributor.author","Baumbach, Jan"],["dc.date.accessioned","2021-09-17T08:41:20Z"],["dc.date.available","2021-09-17T08:41:20Z"],["dc.date.issued","2013-04-02"],["dc.description.abstract","Over the last decade the evaluation of odors and vapors in human breath has gained more and more attention, particularly in the diagnostics of pulmonary diseases. Ion mobility spectrometry coupled with multi-capillary columns (MCC/IMS), is a well known technology for detecting volatile organic compounds (VOCs) in air. It is a comparatively inexpensive, non-invasive, high-throughput method, which is able to handle the moisture that comes with human exhaled air, and allows for characterizing of VOCs in very low concentrations. To identify discriminating compounds as biomarkers, it is necessary to have a clear understanding of the detailed composition of human breath. Therefore, in addition to the clinical studies, there is a need for a flexible and comprehensive centralized data repository, which is capable of gathering all kinds of related information. Moreover, there is a demand for automated data integration and semi-automated data analysis, in particular with regard to the rapid data accumulation, emerging from the high-throughput nature of the MCC/IMS technology. Here, we present a comprehensive database application and analysis platform, which combines metabolic maps with heterogeneous biomedical data in a well-structured manner. The design of the database is based on a hybrid of the entity-attribute-value (EAV) model and the EAV-CR, which incorporates the concepts of classes and relationships. Additionally it offers an intuitive user interface that provides easy and quick access to the platform’s functionality: automated data integration and integrity validation, versioning and roll-back strategy, data retrieval as well as semi-automatic data mining and machine learning capabilities. The platform will support MCC/IMS-based biomarker identification and validation. The software, schemata, data sets and further information is publicly available at http://imsdb.mpi-inf.mpg.de."],["dc.identifier.doi","10.2390/biecoll-jib-2013-218"],["dc.identifier.pmid","23545212"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89612"],["dc.language.iso","en"],["dc.relation.eissn","1613-4516"],["dc.title","An integrative clinical database and diagnostics platform for biomarker identification and analysis in ion mobility spectra of human exhaled air"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2014-09Journal Article Research Paper [["dc.bibliographiccitation.firstpage","398"],["dc.bibliographiccitation.issue","5"],["dc.bibliographiccitation.journal","Briefings in Functional Genomics"],["dc.bibliographiccitation.lastpage","408"],["dc.bibliographiccitation.volume","13"],["dc.contributor.author","Barbosa, Eudes"],["dc.contributor.author","Röttger, Richard"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Azevedo, Vasco"],["dc.contributor.author","Baumbach, Jan"],["dc.date.accessioned","2021-09-17T08:40:49Z"],["dc.date.available","2021-09-17T08:40:49Z"],["dc.date.issued","2014-09"],["dc.description.abstract","We review the level of genomic specificity regarding actinobacterial pathogenicity. As they occupy various niches in diverse habitats, one may assume the existence of lifestyle-specific genomic features. We include 240 actinobacteria classified into four pathogenicity classes: human pathogens (HPs), broad-spectrum pathogens (BPs), opportunistic pathogens (OPs) and non-pathogenic (NP). We hypothesize: (H1) Pathogens (HPs and BPs) possess specific pathogenicity signature genes. (H2) The same holds for OPs. (H3) Broad-spectrum and exclusively HPs cannot be distinguished from each other because of an observation bias, i.e. many HPs might yet be unclassified BPs. (H4) There is no intrinsic genomic characteristic of OPs compared with pathogens, as small mutations are likely to play a more dominant role to survive the immune system. To study these hypotheses, we implemented a bioinformatics pipeline that combines evolutionary sequence analysis with statistical learning methods (Random Forest with feature selection, model tuning and robustness analysis). Essentially, we present orthologous gene sets that computationally distinguish pathogens from NPs (H1). We further show a clear limit in differentiating OPs from both NPs (H2) and pathogens (H4). HPs may also not be distinguished from bacteria annotated as BPs based only on a small set of orthologous genes (H3), as many HPs might as well target a broad range of mammals but have not been annotated accordingly. In conclusion, we illustrate that even in the post-genome era and despite next-generation sequencing technology, our ability to efficiently deduce real-world conclusions, such as pathogenicity classification, remains quite limited."],["dc.identifier.doi","10.1093/bfgp/elu014"],["dc.identifier.pmid","24855068"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89605"],["dc.language.iso","en"],["dc.relation.eissn","2041-2657"],["dc.relation.issn","2041-2649"],["dc.title","On the limits of computational functional genomics for bacterial lifestyle prediction"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2013-04-16Journal Article Research Paper [["dc.bibliographiccitation.firstpage","277"],["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","Metabolites"],["dc.bibliographiccitation.lastpage","293"],["dc.bibliographiccitation.volume","3"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Kopczynski, Dominik"],["dc.contributor.author","D'Addario, Marianna"],["dc.contributor.author","Baumbach, Jörg Ingo"],["dc.contributor.author","Rahmann, Sven"],["dc.contributor.author","Baumbach, Jan"],["dc.date.accessioned","2021-09-17T08:41:36Z"],["dc.date.available","2021-09-17T08:41:36Z"],["dc.date.issued","2013-04-16"],["dc.description.abstract","Ion mobility spectrometry with pre-separation by multi-capillary columns (MCC/IMS) has become an established inexpensive, non-invasive bioanalytics technology for detecting volatile organic compounds (VOCs) with various metabolomics applications in medical research. To pave the way for this technology towards daily usage in medical practice, different steps still have to be taken. With respect to modern biomarker research, one of the most important tasks is the automatic classification of patient-specific data sets into different groups, healthy or not, for instance. Although sophisticated machine learning methods exist, an inevitable preprocessing step is reliable and robust peak detection without manual intervention. In this work we evaluate four state-of-the-art approaches for automated IMS-based peak detection: local maxima search, watershed transformation with IPHEx, region-merging with VisualNow, and peak model estimation (PME).We manually generated Metabolites 2013, 3 278 a gold standard with the aid of a domain expert (manual) and compare the performance of the four peak calling methods with respect to two distinct criteria. We first utilize established machine learning methods and systematically study their classification performance based on the four peak detectors' results. Second, we investigate the classification variance and robustness regarding perturbation and overfitting. Our main finding is that the power of the classification accuracy is almost equally good for all methods, the manually created gold standard as well as the four automatic peak finding methods. In addition, we note that all tools, manual and automatic, are similarly robust against perturbations. However, the classification performance is more robust against overfitting when using the PME as peak calling preprocessor. In summary, we conclude that all methods, though small differences exist, are largely reliable and enable a wide spectrum of real-world biomedical applications."],["dc.identifier.doi","10.3390/metabo3020277"],["dc.identifier.pmid","24957992"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89615"],["dc.language.iso","en"],["dc.relation.issn","2218-1989"],["dc.title","Peak detection method evaluation for ion mobility spectrometry by using machine learning approaches"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC2014-06-13Journal Article Research Paper [["dc.bibliographiccitation.firstpage","236"],["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","Journal of Integrative Bioinformatics"],["dc.bibliographiccitation.volume","11"],["dc.contributor.author","List, Markus"],["dc.contributor.author","Hauschild, Anne-Christin"],["dc.contributor.author","Tan, Qihua"],["dc.contributor.author","Kruse, Torben A."],["dc.contributor.author","Mollenhauer, Jan"],["dc.contributor.author","Baumbach, Jan"],["dc.contributor.author","Batra, Richa"],["dc.date.accessioned","2021-09-17T08:41:25Z"],["dc.date.available","2021-09-17T08:41:25Z"],["dc.date.issued","2014-06-13"],["dc.description.abstract","Selecting the most promising treatment strategy for breast cancer crucially depends on determining the correct subtype. In recent years, gene expression profiling has been investigated as an alternative to histochemical methods. Since databases like TCGA provide easy and unrestricted access to gene expression data for hundreds of patients, the challenge is to extract a minimal optimal set of genes with good prognostic properties from a large bulk of genes making a moderate contribution to classification. Several studies have successfully applied machine learning algorithms to solve this so-called gene selection problem. However, more diverse data from other OMICS technologies are available, including methylation. We hypothesize that combining methylation and gene expression data could already lead to a largely improved classification model, since the resulting model will reflect differences not only on the transcriptomic, but also on an epigenetic level. We compared so-called random forest derived classification models based on gene expression and methylation data alone, to a model based on the combined features and to a model based on the gold standard PAM50. We obtained bootstrap errors of 10-20% and classification error of 1-50%, depending on breast cancer subtype and model. The gene expression model was clearly superior to the methylation model, which was also reflected in the combined model, which mainly selected features from gene expression data. However, the methylation model was able to identify unique features not considered as relevant by the gene expression model, which might provide deeper insights into breast cancer subtype differentiation on an epigenetic level."],["dc.identifier.doi","10.2390/biecoll-jib-2014-236"],["dc.identifier.pmid","24953305"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/89613"],["dc.language.iso","en"],["dc.relation.eissn","1613-4516"],["dc.title","Classification of breast cancer subtypes by combining gene expression and DNA methylation data"],["dc.type","journal_article"],["dc.type.internalPublication","no"],["dc.type.subtype","original_ja"],["dspace.entity.type","Publication"]]Details DOI PMID PMC