Kües, Ursula

[["dc.bibliographiccitation.firstpage","957"],["dc.bibliographiccitation.issue","9"],["dc.bibliographiccitation.journal","Nature Biotechnology"],["dc.bibliographiccitation.lastpage","U10"],["dc.bibliographiccitation.volume","28"],["dc.contributor.author","Ohm, Robin A."],["dc.contributor.author","de Jong, Jan F."],["dc.contributor.author","Lugones, Luis G."],["dc.contributor.author","Aerts, Andrea L."],["dc.contributor.author","Kothe, Erika"],["dc.contributor.author","Stajich, Jason E."],["dc.contributor.author","de Vries, Ronald P."],["dc.contributor.author","Record, Eric"],["dc.contributor.author","Levasseur, Anthony"],["dc.contributor.author","Baker, Scott E."],["dc.contributor.author","Bartholomew, Kirk A."],["dc.contributor.author","Coutinho, Pedro M."],["dc.contributor.author","Erdmann, Susann"],["dc.contributor.author","Fowler, Thomas J."],["dc.contributor.author","Gathman, Allen C."],["dc.contributor.author","Lombard, Vincent"],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Knabe, Nicole"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Lilly, Walt W."],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Lucas, Susan M."],["dc.contributor.author","Magnuson, Jon Karl"],["dc.contributor.author","Piumi, Francois"],["dc.contributor.author","Raudaskoski, Marjatta"],["dc.contributor.author","Salamov, Asaf A."],["dc.contributor.author","Schmutz, Jeremy"],["dc.contributor.author","Schwarze, Francis W. M. R."],["dc.contributor.author","vanKuyk, Patricia A."],["dc.contributor.author","Horton, J. Stephen"],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Wosten, Han A. B."],["dc.date.accessioned","2018-11-07T08:40:02Z"],["dc.date.available","2018-11-07T08:40:02Z"],["dc.date.issued","2010"],["dc.description.abstract","Much remains to be learned about the biology of mushroom-forming fungi, which are an important source of food, secondary metabolites and industrial enzymes. The wood-degrading fungus Schizophyllum commune is both a genetically tractable model for studying mushroom development and a likely source of enzymes capable of efficient degradation of lignocellulosic biomass. Comparative analyses of its 38.5-megabase genome, which encodes 13,210 predicted genes, reveal the species's unique wood-degrading machinery. One-third of the 471 genes predicted to encode transcription factors are differentially expressed during sexual development of S. commune. Whereas inactivation of one of these, fst4, prevented mushroom formation, inactivation of another, fst3, resulted in more, albeit smaller, mushrooms than in the wild-type fungus. Antisense transcripts may also have a role in the formation of fruiting bodies. Better insight into the mechanisms underlying mushroom formation should affect commercial production of mushrooms and their industrial use for producing enzymes and pharmaceuticals."],["dc.identifier.doi","10.1038/nbt.1643"],["dc.identifier.isi","000281719100022"],["dc.identifier.pmid","20622885"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/19133"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Nature Publishing Group"],["dc.relation.issn","1546-1696"],["dc.relation.issn","1087-0156"],["dc.title","Genome sequence of the model mushroom Schizophyllum commune"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1954"],["dc.bibliographiccitation.issue","6"],["dc.bibliographiccitation.journal","PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA"],["dc.bibliographiccitation.lastpage","1959"],["dc.bibliographiccitation.volume","106"],["dc.contributor.author","Martinez, Diego"],["dc.contributor.author","Challacombe, Jean"],["dc.contributor.author","Morgenstern, Ingo"],["dc.contributor.author","Hibbett, David S."],["dc.contributor.author","Schmoll, Monika"],["dc.contributor.author","Kubicek, Christian P."],["dc.contributor.author","Ferreira, Patricia"],["dc.contributor.author","Ruiz-Duenas, Francisco J."],["dc.contributor.author","Martinez, Angel T."],["dc.contributor.author","Kersten, Phil"],["dc.contributor.author","Hammel, Kenneth E."],["dc.contributor.author","Wymelenberg, Amber Vanden"],["dc.contributor.author","Gaskell, Jill A."],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Sabat, Grzegorz"],["dc.contributor.author","BonDurant, Sandra Splinter"],["dc.contributor.author","Larrondo, Luis F."],["dc.contributor.author","Canessa, Paulo"],["dc.contributor.author","Vicuna, Rafael"],["dc.contributor.author","Yadav, Jagjit S."],["dc.contributor.author","Doddapaneni, Harshavardhan"],["dc.contributor.author","Subramanian, Venkataramanan"],["dc.contributor.author","Pisabarro, Antonio G."],["dc.contributor.author","Lavin, Jose L."],["dc.contributor.author","Oguiza, Jose A."],["dc.contributor.author","Master, Emma"],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Coutinho, Pedro M."],["dc.contributor.author","Harris, Paul"],["dc.contributor.author","Magnuson, Jon Karl"],["dc.contributor.author","Baker, Scott E."],["dc.contributor.author","Bruno, Kenneth"],["dc.contributor.author","Kenealy, William"],["dc.contributor.author","Hoegger, Patrick J."],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Ramaiya, Preethi"],["dc.contributor.author","Lucash, Susan"],["dc.contributor.author","Salamov, Asaf A."],["dc.contributor.author","Shapiro, Harris"],["dc.contributor.author","Tu, Hank"],["dc.contributor.author","Chee, Christine L."],["dc.contributor.author","Misra, Monica"],["dc.contributor.author","Xie, Gary"],["dc.contributor.author","Teter, Sarah"],["dc.contributor.author","Yaver, Debbie"],["dc.contributor.author","James, Timothy Y."],["dc.contributor.author","Mokrejs, Martin"],["dc.contributor.author","Pospisek, Martin"],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Brettin, Thomas"],["dc.contributor.author","Rokhsar, Daniel S."],["dc.contributor.author","Berka, Randy M."],["dc.contributor.author","Cullen, Dan"],["dc.date.accessioned","2018-11-07T08:32:46Z"],["dc.date.available","2018-11-07T08:32:46Z"],["dc.date.issued","2009"],["dc.description.abstract","Brown-rot fungi such as Postia placenta are common inhabitants of forest ecosystems and are also largely responsible for the destructive decay of wooden structures. Rapid depolymerization of cellulose is a distinguishing feature of brown-rot, but the biochemical mechanisms and underlying genetics are poorly understood. Systematic examination of the P. placenta genome, transcriptome, and secretome revealed unique extracellular enzyme systems, including an unusual repertoire of extracellular glycoside hydrolases. Genes encoding exo-cellobiohydrolases and cellulose-binding domains, typical of cellulolytic microbes, are absent in this efficient cellulose-degrading fungus. When P. placenta was grown in medium containing cellulose as sole carbon source, transcripts corresponding to many hemicellulases and to a single putative beta-1-4 endoglucanase were expressed at high levels relative to glucose-grown cultures. These transcript profiles were confirmed by direct identification of peptides by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Also up-regulated during growth on cellulose medium were putative iron reductases, quinone reductase, and structurally divergent oxidases potentially involved in extracellular generation of Fe(II) and H(2)O(2). These observations are consistent with a biodegradative role for Fenton chemistry in which Fe( II) and H(2)O(2) react to form hydroxyl radicals, highly reactive oxidants capable of depolymerizing cellulose. The P. placenta genome resources provide unparalleled opportunities for investigating such unusual mechanisms of cellulose conversion. More broadly, the genome offers insight into the diversification of lignocellulose degrading mechanisms in fungi. Comparisons with the closely related white-rot fungus Phanerochaete chrysosporium support an evolutionary shift from white-rot to brown-rot during which the capacity for efficient depolymerization of lignin was lost."],["dc.identifier.doi","10.1073/pnas.0809575106"],["dc.identifier.isi","000263252500052"],["dc.identifier.pmid","19193860"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/17419"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Natl Acad Sciences"],["dc.relation.issn","0027-8424"],["dc.title","Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","e1004759"],["dc.bibliographiccitation.issue","12"],["dc.bibliographiccitation.journal","PLoS Genetics"],["dc.bibliographiccitation.volume","10"],["dc.contributor.author","Hori, Chiaki"],["dc.contributor.author","Ishida, Takuya"],["dc.contributor.author","Igarashi, Kiyohiko"],["dc.contributor.author","Samejima, Masahiro"],["dc.contributor.author","Suzuki, Hitoshi"],["dc.contributor.author","Master, Emma"],["dc.contributor.author","Ferreira, Patricia"],["dc.contributor.author","Ruiz-Duenas, Francisco J."],["dc.contributor.author","Held, Benjamin W."],["dc.contributor.author","Canessa, Paulo"],["dc.contributor.author","Larrondo, Luis F."],["dc.contributor.author","Schmoll, Monika"],["dc.contributor.author","Druzhinina, Irina S."],["dc.contributor.author","Kubicek, Christian P."],["dc.contributor.author","Gaskell, Jill A."],["dc.contributor.author","Kersten, Phil"],["dc.contributor.author","St John, Franz"],["dc.contributor.author","Glasner, Jeremy"],["dc.contributor.author","Sabat, Grzegorz"],["dc.contributor.author","BonDurant, Sandra Splinter"],["dc.contributor.author","Syed, Khajamohiddin"],["dc.contributor.author","Yadav, Jagjit S."],["dc.contributor.author","Mgbeahuruike, Anthony C."],["dc.contributor.author","Kovalchuk, Andriy"],["dc.contributor.author","Asiegbu, Fred O."],["dc.contributor.author","Lackner, Gerald"],["dc.contributor.author","Hoffmeister, Dirk"],["dc.contributor.author","Rencoret, Jorge"],["dc.contributor.author","Gutierrez, Ana"],["dc.contributor.author","Sun, Hui"],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Barry, Kerrie"],["dc.contributor.author","Riley, Robert W."],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Berka, Randy M."],["dc.contributor.author","Martinez, Angel T."],["dc.contributor.author","Covert, Sarah F."],["dc.contributor.author","Blanchette, Robert A."],["dc.contributor.author","Cullen, Daniel"],["dc.date.accessioned","2018-11-07T09:31:52Z"],["dc.date.available","2018-11-07T09:31:52Z"],["dc.date.issued","2014"],["dc.description.abstract","Collectively classified as white-rot fungi, certain basidiomycetes efficiently degrade the major structural polymers of wood cell walls. A small subset of these Agaricomycetes, exemplified by Phlebiopsis gigantea, is capable of colonizing freshly exposed conifer sapwood despite its high content of extractives, which retards the establishment of other fungal species. The mechanism(s) by which P. gigantea tolerates and metabolizes resinous compounds have not been explored. Here, we report the annotated P. gigantea genome and compare profiles of its transcriptome and secretome when cultured on fresh-cut versus solvent-extracted loblolly pine wood. The P. gigantea genome contains a conventional repertoire of hydrolase genes involved in cellulose/hemicellulose degradation, whose patterns of expression were relatively unperturbed by the absence of extractives. The expression of genes typically ascribed to lignin degradation was also largely unaffected. In contrast, genes likely involved in the transformation and detoxification of wood extractives were highly induced in its presence. Their products included an ABC transporter, lipases, cytochrome P450s, glutathione S-transferase and aldehyde dehydrogenase. Other regulated genes of unknown function and several constitutively expressed genes are also likely involved in P. gigantea's extractives metabolism. These results contribute to our fundamental understanding of pioneer colonization of conifer wood and provide insight into the diverse chemistries employed by fungi in carbon cycling processes."],["dc.identifier.doi","10.1371/journal.pgen.1004759"],["dc.identifier.fs","606903"],["dc.identifier.isi","000346649900006"],["dc.identifier.pmid","25474575"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/11223"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/31626"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Public Library Science"],["dc.relation.issn","1553-7404"],["dc.relation.issn","1553-7390"],["dc.rights.access","openAccess"],["dc.title","Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","78"],["dc.bibliographiccitation.journal","Fungal Genetics and Biology"],["dc.bibliographiccitation.lastpage","92"],["dc.bibliographiccitation.volume","76"],["dc.contributor.author","Floudas, Dimitrios"],["dc.contributor.author","Held, Benjamin W."],["dc.contributor.author","Riley, Robert W."],["dc.contributor.author","Nagy, Laszlo G."],["dc.contributor.author","Koehler, Gage"],["dc.contributor.author","Ransdell, Anthony S."],["dc.contributor.author","Younus, Hina"],["dc.contributor.author","Chow, Julianna"],["dc.contributor.author","Chiniquy, Jennifer"],["dc.contributor.author","Lipzen, Anna"],["dc.contributor.author","Tritt, Andrew"],["dc.contributor.author","Sun, Hui"],["dc.contributor.author","Haridas, Sajeet"],["dc.contributor.author","LaButti, Kurt M."],["dc.contributor.author","Ohm, Robin A."],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Blanchette, Robert A."],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Minto, Robert E."],["dc.contributor.author","Hibbett, David S."],["dc.date.accessioned","2018-11-07T10:00:00Z"],["dc.date.available","2018-11-07T10:00:00Z"],["dc.date.issued","2015"],["dc.description.abstract","Wood decay mechanisms in Agaricomycotina have been traditionally separated in two categories termed white and brown rot. Recently the accuracy of such a dichotomy has been questioned. Here, we present the genome sequences of the white-rot fungus Cylindrobasidium torrendii and the brown-rot fungus Fistulina hepatica both members of Agaricales, combining comparative genomics and wood decay experiments. C torrendii is closely related to the white-rot root pathogen Armillaria mellea, while F. hepatica is related to Schizophyllum commune, which has been reported to cause white rot. Our results suggest that C torrendii and S. commune are intermediate between white-rot and brown-rot fungi, but at the same time they show characteristics of decay that resembles soft rot. Both species cause weak wood decay and degrade all wood components but leave the middle lamella intact. Their gene content related to lignin degradation is reduced, similar to brown-rot fungi, but both have maintained a rich array of genes related to carbohydrate degradation, similar to white-rot fungi. These characteristics appear to have evolved from white-rot ancestors with stronger ligninolytic ability. F. hepatica shows characteristics of brown rot both in terms of wood decay genes found in its genome and the decay that it causes. However, genes related to cellulose degradation are still present, which is a plesiomorphic characteristic shared with its white-rot ancestors. Four wood degradation-related genes, homologs of which are frequently lost in brown-rot fungi, show signs of pseudogenization in the genome of F. hepatica. These results suggest that transition toward a brown-rot lifestyle could be an ongoing process in F. hepatica. Our results reinforce the idea that wood decay mechanisms are more diverse than initially thought and that the dichotomous separation of wood decay mechanisms in Agaricomycotina into white rot and brown rot should be revisited. (C) 2015 Elsevier Inc. All rights reserved."],["dc.identifier.doi","10.1016/j.fgb.2015.02.002"],["dc.identifier.isi","000353527200009"],["dc.identifier.pmid","25683379"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/37708"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Academic Press Inc Elsevier Science"],["dc.relation.issn","1096-0937"],["dc.relation.issn","1087-1845"],["dc.title","Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1001"],["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","New Phytologist"],["dc.bibliographiccitation.lastpage","1013"],["dc.bibliographiccitation.volume","194"],["dc.contributor.author","Olson, Ake"],["dc.contributor.author","Aerts, Andrea L."],["dc.contributor.author","Asiegbu, Fred O."],["dc.contributor.author","Belbahri, Lassaad"],["dc.contributor.author","Bouzid, Ourdia"],["dc.contributor.author","Broberg, Anders"],["dc.contributor.author","Canback, Bjorn"],["dc.contributor.author","Coutinho, Pedro M."],["dc.contributor.author","Cullen, Dan"],["dc.contributor.author","Dalman, Kerstin"],["dc.contributor.author","Deflorio, Giuliana"],["dc.contributor.author","van Diepen, Linda T. A."],["dc.contributor.author","Dunand, Christophe"],["dc.contributor.author","Duplessis, Sebastien"],["dc.contributor.author","Durling, Mikael"],["dc.contributor.author","Gonthier, Paolo"],["dc.contributor.author","Grimwood, Jane"],["dc.contributor.author","Fossdal, Carl Gunnar"],["dc.contributor.author","Hansson, David"],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Hietala, Ari"],["dc.contributor.author","Himmelstrand, Kajsa"],["dc.contributor.author","Hoffmeister, Dirk"],["dc.contributor.author","Hogberg, Nils"],["dc.contributor.author","James, Timothy Y."],["dc.contributor.author","Karlsson, Magnus"],["dc.contributor.author","Kohler, Annegret"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Lee, Yong-Hwan"],["dc.contributor.author","Lin, Yao-Cheng"],["dc.contributor.author","Lind, Marten"],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Lombard, Vincent"],["dc.contributor.author","Lucas, Susan M."],["dc.contributor.author","Lunden, Karl"],["dc.contributor.author","Morin, Emmanuelle"],["dc.contributor.author","Murat, Claude"],["dc.contributor.author","Park, Jongsun"],["dc.contributor.author","Raffaello, Tommaso"],["dc.contributor.author","Rouze, Pierre"],["dc.contributor.author","Salamov, Asaf A."],["dc.contributor.author","Schmutz, Jeremy"],["dc.contributor.author","Solheim, Halvor"],["dc.contributor.author","Stahlberg, Jerry"],["dc.contributor.author","Velez, Heriberto"],["dc.contributor.author","de Vries, Ronald P."],["dc.contributor.author","Wiebenga, A. D."],["dc.contributor.author","Woodward, Steve"],["dc.contributor.author","Yakovlev, Igor"],["dc.contributor.author","Garbelotto, Matteo"],["dc.contributor.author","Martin, Francis M."],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Stenlid, Jan"],["dc.date.accessioned","2018-11-07T09:10:07Z"],["dc.date.available","2018-11-07T09:10:07Z"],["dc.date.issued","2012"],["dc.description.abstract","Parasitism and saprotrophic wood decay are two fungal strategies fundamental for succession and nutrient cycling in forest ecosystems. An opportunity to assess the trade-off between these strategies is provided by the forest pathogen and wood decayer Heterobasidion annosum sensu lato. We report the annotated genome sequence and transcript profiling, as well as the quantitative trait loci mapping, of one member of the species complex: H similar to irregulare. Quantitative trait loci critical for pathogenicity, and rich in transposable elements, orphan and secreted genes, were identified. A wide range of cellulose-degrading enzymes are expressed during wood decay. By contrast, pathogenic interaction between H similar to irregulare and pine engages fewer carbohydrate-active enzymes, but involves an increase in pectinolytic enzymes, transcription modules for oxidative stress and secondary metabolite production. Our results show a trade-off in terms of constrained carbohydrate decomposition and membrane transport capacity during interaction with living hosts. Our findings establish that saprotrophic wood decay and necrotrophic parasitism involve two distinct, yet overlapping, processes."],["dc.identifier.doi","10.1111/j.1469-8137.2012.04128.x"],["dc.identifier.isi","000303435400014"],["dc.identifier.pmid","22463738"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/26422"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Wiley"],["dc.relation.issn","1469-8137"],["dc.relation.issn","0028-646X"],["dc.title","Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","199"],["dc.bibliographiccitation.issue","3"],["dc.bibliographiccitation.journal","Fungal Genetics and Biology"],["dc.bibliographiccitation.lastpage","209"],["dc.bibliographiccitation.volume","49"],["dc.contributor.author","Plett, Jonathan M."],["dc.contributor.author","Gibon, Julien"],["dc.contributor.author","Kohler, Annegret"],["dc.contributor.author","Duffy, Kecia"],["dc.contributor.author","Hoegger, Patrick J."],["dc.contributor.author","Velagapudi, Rajesh"],["dc.contributor.author","Han, James"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Martin, Francis M."],["dc.date.accessioned","2018-11-07T09:12:48Z"],["dc.date.available","2018-11-07T09:12:48Z"],["dc.date.issued","2012"],["dc.description.abstract","Hydrophobins are morphogenetic, small secreted hydrophobic fungal proteins produced in response to changing development and environmental conditions. These proteins are important in the interaction between certain fungi and their hosts. In mutualistic ectomycorrhizal fungi several hydrophobins form a subclass of mycorrhizal-induced small secreted proteins that are likely to be critical in the formation of the symbiotic interface with host root cells. In this study, two genomes of the ectomycorrhizal basidiomycete Laccaria bicolor strains S238N-H82 (from North America) and 81306 (from Europe) were surveyed to construct a comprehensive genome-wide inventory of hydrophobins and to explore their characteristics and roles during host colonization. The S238N-H82 L bicolor hydrophobin gene family is composed of 12 genes while the 81306 strain encodes nine hydrophobins, all corresponding to class I hydrophobins. The three extra hydrophobin genes encoded by the S238N-H82 genome likely arose via gene duplication and are bordered by transposon rich regions. Expression profiles of the hydrophobin genes oft. bicolor varied greatly depending on life stage (e.g. free living mycelium vs. root colonization) and on the host root environment. We conclude from this study that the complex diversity and range of expression profiles of the Laccaria hydrophobin multi-gene family have likely been a selective advantage for this mutualist in colonizing a wide range of host plants. (C) 2012 Elsevier Inc. All rights reserved."],["dc.identifier.doi","10.1016/j.fgb.2012.01.002"],["dc.identifier.isi","000301881100002"],["dc.identifier.pmid","22293303"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/27027"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Academic Press Inc Elsevier Science"],["dc.relation.issn","1087-1845"],["dc.title","Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","17501"],["dc.bibliographiccitation.issue","43"],["dc.bibliographiccitation.journal","PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA"],["dc.bibliographiccitation.lastpage","17506"],["dc.bibliographiccitation.volume","109"],["dc.contributor.author","Morin, Emmanuelle"],["dc.contributor.author","Kohler, Annegret"],["dc.contributor.author","Baker, Adam R."],["dc.contributor.author","Foulongne-Oriol, Marie"],["dc.contributor.author","Lombard, Vincent"],["dc.contributor.author","Nagy, Laszlo G."],["dc.contributor.author","Ohm, Robin A."],["dc.contributor.author","Patyshakuliyeva, Aleksandrina"],["dc.contributor.author","Brun, Annick"],["dc.contributor.author","Aerts, Andrea L."],["dc.contributor.author","Bailey, Andrew M."],["dc.contributor.author","Billette, Christophe"],["dc.contributor.author","Coutinho, Pedro M."],["dc.contributor.author","Deakin, Greg"],["dc.contributor.author","Doddapaneni, Harshavardhan"],["dc.contributor.author","Floudas, Dimitrios"],["dc.contributor.author","Grimwood, Jane"],["dc.contributor.author","Hilden, Kristiina"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","LaButti, Kurt M."],["dc.contributor.author","Lapidus, Alla"],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Lucas, Susan M."],["dc.contributor.author","Murat, Claude"],["dc.contributor.author","Riley, Robert W."],["dc.contributor.author","Salamov, Asaf A."],["dc.contributor.author","Schmutz, Jeremy"],["dc.contributor.author","Subramanian, Venkataramanan"],["dc.contributor.author","Wosteng, Han A. B."],["dc.contributor.author","Xu, J."],["dc.contributor.author","Eastwood, Daniel C."],["dc.contributor.author","Foster, Gary D."],["dc.contributor.author","Sonnenberg, Anton S. M."],["dc.contributor.author","Cullen, Dan"],["dc.contributor.author","de Vries, Ronald P."],["dc.contributor.author","Lundell, Taina"],["dc.contributor.author","Hibbett, David S."],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Burton, Kerry S."],["dc.contributor.author","Kerrigan, Richard W."],["dc.contributor.author","Challen, Michael P."],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Martin, Francis M."],["dc.date.accessioned","2018-11-07T09:04:27Z"],["dc.date.available","2018-11-07T09:04:27Z"],["dc.date.issued","2012"],["dc.description.abstract","Agaricusbisporus is the model fungus for the adaptation, persistence, and growth in the humic-rich leaf-litter environment. Aside from its ecological role, A. bisporus has been an important component of the human diet for over 200 y and worldwide cultivation of the \"button mushroom\" forms a multibillion dollar industry. We present two A. bisporus genomes, their gene repertoires and transcript profiles on compost and during mushroom formation. The genomes encode a full repertoire of polysaccharide-degrading enzymes similar to that of wood-decayers. Comparative transcriptomics of mycelium grown on defined medium, casing-soil, and compost revealed genes encoding enzymes involved in xylan, cellulose, pectin, and protein degradation are more highly expressed in compost. The striking expansion of heme-thiolate peroxidases and beta-etherases is distinctive from Agaricomycotina wood-decayers and suggests a broad attack on decaying lignin and related metabolites found in humic acid-rich environment. Similarly, up-regulation of these genes together with a lignolytic manganese peroxidase, multiple copper radical oxidases, and cytochrome P450s is consistent with challenges posed by complex humic-rich substrates. The gene repertoire and expression of hydrolytic enzymes in A. bisporus is substantially different from the taxonomically related ectomycorrhizal symbiont Laccaria bicolor. A common promoter motif was also identified in genes very highly expressed in humic-rich substrates. These observations reveal genetic and enzymatic mechanisms governing adaptation to the humic-rich ecological niche formed during plant degradation, further defining the critical role such fungi contribute to soil structure and carbon sequestration in terrestrial ecosystems. Genome sequence will expedite mushroom breeding for improved agronomic characteristics."],["dc.identifier.doi","10.1073/pnas.1206847109"],["dc.identifier.isi","000311147800043"],["dc.identifier.pmid","23045686"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/25119"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Natl Acad Sciences"],["dc.relation.issn","0027-8424"],["dc.title","Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","10"],["dc.bibliographiccitation.journal","PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA"],["dc.bibliographiccitation.volume","110"],["dc.contributor.author","Morin, Emmanuelle"],["dc.contributor.author","Kohler, Annegret"],["dc.contributor.author","Baker, Adam R."],["dc.contributor.author","Foulongne-Oriol, Marie"],["dc.contributor.author","Lombard, Vincent"],["dc.contributor.author","Nagy, Laszlo G."],["dc.contributor.author","Ohm, Robin A."],["dc.contributor.author","Patyshakuliyeva, Aleksandrina"],["dc.contributor.author","Brun, Annick"],["dc.contributor.author","Aerts, Andrea L."],["dc.contributor.author","Bailey, Andrew M."],["dc.contributor.author","Billette, Christophe"],["dc.contributor.author","Coutinho, Pedro M."],["dc.contributor.author","Deakin, Greg"],["dc.contributor.author","Doddapaneni, Harshavardhan"],["dc.contributor.author","Floudas, Dimitrios"],["dc.contributor.author","Grimwood, Jane"],["dc.contributor.author","Hilden, Kristiina"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","LaButti, Kurt M."],["dc.contributor.author","Lapidus, Alla"],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Lucas, Susan M."],["dc.contributor.author","Murat, Claude"],["dc.contributor.author","Riley, Robert W."],["dc.contributor.author","Salamov, Asaf A."],["dc.contributor.author","Schmutz, Jeremy"],["dc.contributor.author","Subramanian, Venkataramanan"],["dc.contributor.author","Wosten, Han A. B."],["dc.contributor.author","Xu, J."],["dc.contributor.author","Eastwood, Daniel C."],["dc.contributor.author","Foster, Gary D."],["dc.contributor.author","Sonnenberg, Anton S. M."],["dc.contributor.author","Cullen, Dan"],["dc.contributor.author","de Vries, Ronald P."],["dc.contributor.author","Lundell, Taina"],["dc.contributor.author","Hibbett, David S."],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Burton, Kerry S."],["dc.contributor.author","Kerrigan, Richard W."],["dc.contributor.author","Challen, Michael P."],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Martin, Francis M."],["dc.date.accessioned","2018-11-07T09:28:12Z"],["dc.date.available","2018-11-07T09:28:12Z"],["dc.date.issued","2013"],["dc.format.extent","4146"],["dc.identifier.doi","10.1073/pnas.1300201110"],["dc.identifier.isi","000315812800010"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/30719"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Natl Acad Sciences"],["dc.relation.issn","0027-8424"],["dc.title","Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","9166"],["dc.bibliographiccitation.issue","22"],["dc.bibliographiccitation.journal","PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA"],["dc.bibliographiccitation.lastpage","9171"],["dc.bibliographiccitation.volume","108"],["dc.contributor.author","Duplessis, Sebastien"],["dc.contributor.author","Cuomo, Christina A."],["dc.contributor.author","Lin, Yao-Cheng"],["dc.contributor.author","Aerts, Andrea L."],["dc.contributor.author","Tisserant, Emilie"],["dc.contributor.author","Veneault-Fourrey, Claire"],["dc.contributor.author","Joly, David L."],["dc.contributor.author","Hacquard, Stephane"],["dc.contributor.author","Amselem, Joelle"],["dc.contributor.author","Cantarel, Brandi L."],["dc.contributor.author","Chiu, Readman"],["dc.contributor.author","Coutinho, Pedro M."],["dc.contributor.author","Feau, Nicolas"],["dc.contributor.author","Field, Matthew"],["dc.contributor.author","Frey, Pascal"],["dc.contributor.author","Gelhaye, Eric"],["dc.contributor.author","Goldberg, Jonathan"],["dc.contributor.author","Grabherr, Manfred G."],["dc.contributor.author","Kodira, Chinnappa D."],["dc.contributor.author","Kohler, Annegret"],["dc.contributor.author","Kuees, Ursula"],["dc.contributor.author","Lindquist, Erika A."],["dc.contributor.author","Lucas, Susan M."],["dc.contributor.author","Mago, Rohit"],["dc.contributor.author","Mauceli, Evan"],["dc.contributor.author","Morin, Emmanuelle"],["dc.contributor.author","Murat, Claude"],["dc.contributor.author","Pangilinan, Jasmyn L."],["dc.contributor.author","Park, Robert"],["dc.contributor.author","Pearson, Matthew"],["dc.contributor.author","Quesneville, Hadi"],["dc.contributor.author","Rouhier, Nicolas"],["dc.contributor.author","Sakthikumar, Sharadha"],["dc.contributor.author","Salamov, Asaf A."],["dc.contributor.author","Schmutz, Jeremy"],["dc.contributor.author","Selles, Benjamin"],["dc.contributor.author","Shapiro, Harris"],["dc.contributor.author","Tanguay, Philippe"],["dc.contributor.author","Tuskan, Gerald A."],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","van de Peer, Yves"],["dc.contributor.author","Rouze, Pierre"],["dc.contributor.author","Ellis, Jeffrey G."],["dc.contributor.author","Dodds, Peter N."],["dc.contributor.author","Schein, Jacqueline E."],["dc.contributor.author","Zhong, Shaobin"],["dc.contributor.author","Hamelin, Richard C."],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Szabo, Les J."],["dc.contributor.author","Martin, Francis M."],["dc.date.accessioned","2018-11-07T08:55:58Z"],["dc.date.available","2018-11-07T08:55:58Z"],["dc.date.issued","2011"],["dc.description.abstract","Rust fungi are some of the most devastating pathogens of crop plants. They are obligate biotrophs, which extract nutrients only from living plant tissues and cannot grow apart from their hosts. Their lifestyle has slowed the dissection of molecular mechanisms underlying host invasion and avoidance or suppression of plant innate immunity. We sequenced the 101-Mb genome of Melampsora larici-populina, the causal agent of poplar leaf rust, and the 89-Mb genome of Puccinia graminis f. sp. tritici, the causal agent of wheat and barley stem rust. We then compared the 16,399 predicted proteins of M. larici-populina with the 17,773 predicted proteins of P. graminis f. sp tritici. Genomic features related to their obligate biotrophic lifestyle include expanded lineage-specific gene families, a large repertoire of effector-like small secreted proteins, impaired nitrogen and sulfur assimilation pathways, and expanded families of amino acid and oligopeptide membrane transporters. The dramatic up-regulation of transcripts coding for small secreted proteins, secreted hydrolytic enzymes, and transporters in planta suggests that they play a role in host infection and nutrient acquisition. Some of these genomic hallmarks are mirrored in the genomes of other microbial eukaryotes that have independently evolved to infect plants, indicating convergent adaptation to a biotrophic existence inside plant cells."],["dc.identifier.doi","10.1073/pnas.1019315108"],["dc.identifier.isi","000291106200053"],["dc.identifier.pmid","21536894"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/23039"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Natl Acad Sciences"],["dc.relation.issn","0027-8424"],["dc.title","Obligate biotrophy features unraveled by the genomic analysis of rust fungi"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","7409"],["dc.bibliographiccitation.issue","15"],["dc.bibliographiccitation.journal","Proceedings of the National Academy of Sciences"],["dc.bibliographiccitation.lastpage","7418"],["dc.bibliographiccitation.volume","116"],["dc.contributor.author","Krizsán, Krisztina"],["dc.contributor.author","Almási, Éva"],["dc.contributor.author","Merényi, Zsolt"],["dc.contributor.author","Sahu, Neha"],["dc.contributor.author","Virágh, Máté"],["dc.contributor.author","Kószó, Tamás"],["dc.contributor.author","Mondo, Stephen"],["dc.contributor.author","Kiss, Brigitta"],["dc.contributor.author","Bálint, Balázs"],["dc.contributor.author","Kües, Ursula"],["dc.contributor.author","Barry, Kerrie"],["dc.contributor.author","Cseklye, Judit"],["dc.contributor.author","Hegedüs, Botond"],["dc.contributor.author","Henrissat, Bernard"],["dc.contributor.author","Johnson, Jenifer"],["dc.contributor.author","Lipzen, Anna"],["dc.contributor.author","Ohm, Robin A."],["dc.contributor.author","Nagy, István"],["dc.contributor.author","Pangilinan, Jasmyn"],["dc.contributor.author","Yan, Juying"],["dc.contributor.author","Xiong, Yi"],["dc.contributor.author","Grigoriev, Igor V."],["dc.contributor.author","Hibbett, David S."],["dc.contributor.author","Nagy, László G."],["dc.date.accessioned","2020-12-10T18:12:51Z"],["dc.date.available","2020-12-10T18:12:51Z"],["dc.date.issued","2019"],["dc.identifier.doi","10.1073/pnas.1817822116"],["dc.identifier.eissn","1091-6490"],["dc.identifier.issn","0027-8424"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/74518"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]