Roos, Christian

[["dc.bibliographiccitation.artnumber","222"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","BMC Genomics"],["dc.bibliographiccitation.volume","16"],["dc.contributor.author","Liedigk, Rasmus"],["dc.contributor.author","Kolleck, Jakob"],["dc.contributor.author","Böker, Kai O."],["dc.contributor.author","Meijaard, Erik"],["dc.contributor.author","Md-Zain, Badrul M."],["dc.contributor.author","Abdul-Latiff, Muhammad A. B."],["dc.contributor.author","Ampeng, Ahmad"],["dc.contributor.author","Lakim, Maklarin"],["dc.contributor.author","Abdul-Patah, Pazil"],["dc.contributor.author","Tosi, Anthony J."],["dc.contributor.author","Brameier, Markus"],["dc.contributor.author","Zinner, Dietmar"],["dc.contributor.author","Roos, Christian"],["dc.date.accessioned","2019-07-09T11:41:52Z"],["dc.date.available","2019-07-09T11:41:52Z"],["dc.date.issued","2015"],["dc.description.abstract","Abstract Background Long-tailed macaques (Macaca fascicularis) are an important model species in biomedical research and reliable knowledge about their evolutionary history is essential for biomedical inferences. Ten subspecies have been recognized, of which most are restricted to small islands of Southeast Asia. In contrast, the common long-tailed macaque (M. f. fascicularis) is distributed over large parts of the Southeast Asian mainland and the Sundaland region. To shed more light on the phylogeny of M. f. fascicularis, we sequenced complete mitochondrial (mtDNA) genomes of 40 individuals from all over the taxon’s range, either by classical PCR-amplification and Sanger sequencing or by DNA-capture and high-throughput sequencing. Results Both laboratory approaches yielded complete mtDNA genomes from M. f. fascicularis with high accuracy and/or coverage. According to our phylogenetic reconstructions, M. f. fascicularis initially diverged into two clades 1.70 million years ago (Ma), with one including haplotypes from mainland Southeast Asia, the Malay Peninsula and North Sumatra (Clade A) and the other, haplotypes from the islands of Bangka, Java, Borneo, Timor, and the Philippines (Clade B). The three geographical populations of Clade A appear as paraphyletic groups, while local populations of Clade B form monophyletic clades with the exception of a Philippine individual which is nested within the Borneo clade. Further, in Clade B the branching pattern among main clades/lineages remains largely unresolved, most likely due to their relatively rapid diversification 0.93-0.84 Ma. Conclusions Both laboratory methods have proven to be powerful to generate complete mtDNA genome data with similarly high accuracy, with the DNA-capture and high-throughput sequencing approach as the most promising and only practical option to obtain such data from highly degraded DNA, in time and with relatively low costs. The application of complete mtDNA genomes yields new insights into the evolutionary history of M. f. fascicularis by providing a more robust phylogeny and more reliable divergence age estimations than earlier studies."],["dc.identifier.doi","10.1186/s12864-015-1437-0"],["dc.identifier.pmid","25887664"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/12486"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/58534"],["dc.language.iso","en"],["dc.notes.intern","Merged from goescholar"],["dc.rights","CC BY 4.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/4.0"],["dc.title","Mitogenomic phylogeny of the common long-tailed macaque (Macaca fascicularis fascicularis)"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","970"],["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","The Journal of Immunology"],["dc.bibliographiccitation.lastpage","975"],["dc.bibliographiccitation.volume","174"],["dc.contributor.author","Roos, Christian"],["dc.contributor.author","Dressel, Ralf"],["dc.contributor.author","Schmidt, Bernhard"],["dc.contributor.author","Günther, Eberhard"],["dc.contributor.author","Walter, Lutz"],["dc.date.accessioned","2022-10-06T13:26:53Z"],["dc.date.available","2022-10-06T13:26:53Z"],["dc.date.issued","2005"],["dc.identifier.doi","10.4049/jimmunol.174.2.970"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/115191"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-602"],["dc.relation.eissn","1550-6606"],["dc.relation.issn","0022-1767"],["dc.relation.orgunit","Deutsches Primatenzentrum"],["dc.title","The Rat Expresses Two Complement Factor C4 Proteins, but Only One Isotype Is Expressed in the Liver"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","83"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","BMC Evolutionary Biology"],["dc.bibliographiccitation.volume","9"],["dc.contributor.author","Zinner, Dietmar"],["dc.contributor.author","Groeneveld, Linn F."],["dc.contributor.author","Keller, Christina"],["dc.contributor.author","Roos, Christian"],["dc.date.accessioned","2022-08-09T12:22:51Z"],["dc.date.available","2022-08-09T12:22:51Z"],["dc.date.issued","2009-04-23"],["dc.description.abstract","Baboons of the genus Papio are distributed over wide ranges of Africa and even colonized parts of the Arabian Peninsula. Traditionally, five phenotypically distinct species are recognized, but recent molecular studies were not able to resolve their phylogenetic relationships. Moreover, these studies revealed para- and polyphyletic (hereafter paraphyletic) mitochondrial clades for baboons from eastern Africa, and it was hypothesized that introgressive hybridization might have contributed substantially to their evolutionary history. To further elucidate the phylogenetic relationships among baboons, we extended earlier studies by analysing the complete mitochondrial cytochrome b gene and the 'Brown region' from 67 specimens collected at 53 sites, which represent all species and which cover most of the baboons' range."],["dc.identifier.doi","10.1186/1471-2148-9-83"],["dc.identifier.pmid","19389236"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/112706"],["dc.language.iso","en"],["dc.relation.eissn","1471-2148"],["dc.relation.haserratum","/handle/2/91752"],["dc.relation.issn","1471-2148"],["dc.rights","CC BY 2.0"],["dc.title","Mitochondrial phylogeography of baboons (Papio spp.): indication for introgressive hybridization?"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.subtype","original_ja"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","239"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","BMC Genomics"],["dc.bibliographiccitation.volume","22"],["dc.contributor.author","Malukiewicz, Joanna"],["dc.contributor.author","Cartwright, Reed A."],["dc.contributor.author","Curi, Nelson H. A."],["dc.contributor.author","Dergam, Jorge A."],["dc.contributor.author","Igayara, Claudia S."],["dc.contributor.author","Moreira, Silvia B."],["dc.contributor.author","Molina, Camila V."],["dc.contributor.author","Nicola, Patricia A."],["dc.contributor.author","Noll, Angela"],["dc.contributor.author","Passamani, Marcello"],["dc.contributor.author","Pereira, Luiz C. M."],["dc.contributor.author","Pissinatti, Alcides"],["dc.contributor.author","Ruiz-Miranda, Carlos R."],["dc.contributor.author","Silva, Daniel L."],["dc.contributor.author","Stone, Anne C."],["dc.contributor.author","Zinner, Dietmar"],["dc.contributor.author","Roos, Christian"],["dc.date.accessioned","2021-06-01T09:42:14Z"],["dc.date.accessioned","2022-08-18T12:34:07Z"],["dc.date.available","2021-06-01T09:42:14Z"],["dc.date.available","2022-08-18T12:34:07Z"],["dc.date.issued","2021-04-06"],["dc.date.updated","2022-07-29T12:07:00Z"],["dc.description.abstract","Abstract\r\n \r\n Background\r\n Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total.\r\n \r\n \r\n Results\r\n We report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita.\r\n \r\n \r\n Conclusion\r\n Our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest."],["dc.identifier.citation","BMC Genomics. 2021 Apr 06;22(1):239"],["dc.identifier.doi","10.1186/s12864-021-07533-1"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/17751"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/85188"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/112926"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-425"],["dc.notes.intern","Merged from goescholar"],["dc.publisher","BioMed Central"],["dc.relation.eissn","1471-2164"],["dc.rights","CC BY 4.0"],["dc.rights.holder","The Author(s)"],["dc.rights.uri","https://creativecommons.org/licenses/by/4.0"],["dc.subject","mtDNA"],["dc.subject","Marmoset"],["dc.subject","Divergence"],["dc.subject","Atlantic forest"],["dc.subject","Brazil"],["dc.subject","Callitrichidae"],["dc.subject","Primate"],["dc.title","Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","Scientific Reports"],["dc.bibliographiccitation.volume","10"],["dc.contributor.author","Dolotovskaya, Sofya"],["dc.contributor.author","Roos, Christian"],["dc.contributor.author","Heymann, Eckhard W."],["dc.date.accessioned","2022-10-06T13:34:18Z"],["dc.date.available","2022-10-06T13:34:18Z"],["dc.date.issued","2020"],["dc.description.abstract","Abstract\n \n In pair-living mammals, genetic monogamy is extremely rare. One possible reason is that in socially monogamous animals, mate choice can be severely constrained, increasing the risk of inbreeding or pairing with an incompatible or low-quality partner. To escape these constraints, individuals might engage in extra-pair copulations. Alternatively, inbreeding can be avoided by dispersal. However, little is known about the interactions between mating system, mate choice, and dispersal in pair-living mammals. Here we genotyped 41 wild individuals from 14 groups of coppery titi monkeys (\n Plecturocebus cupreus\n ) in Peruvian Amazon using 18 microsatellite loci. Parentage analyses of 18 young revealed no cases of extra-pair paternity, indicating that the study population is mostly genetically monogamous. We did not find evidence for relatedness- or heterozygosity-based mate choice. Despite the lack of evidence for active inbreeding avoidance via mate choice, mating partners were on average not related. We further found that dispersal was not sex-biased, with both sexes dispersing opportunistically over varying distances. Our findings suggest that even opportunistic dispersal, as long as it is not constrained, can generate sufficient genetic diversity to prevent inbreeding. This, in turn, can render active inbreeding avoidance via mate choice and extra-pair copulations less necessary, helping to maintain genetic monogamy."],["dc.description.sponsorship"," Leakey Foundation 100005966"],["dc.description.sponsorship"," German Research Foundation 501100001659"],["dc.description.sponsorship","International Primatological Society"],["dc.description.sponsorship","Primate Action Fund"],["dc.description.sponsorship"," Deutsches Primatenzentrum 501100004938"],["dc.description.sponsorship","Projekt DEAL"],["dc.identifier.doi","10.1038/s41598-020-77132-9"],["dc.identifier.pii","77132"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/115877"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-602"],["dc.relation.eissn","2045-2322"],["dc.relation.orgunit","Deutsches Primatenzentrum"],["dc.rights.uri","https://creativecommons.org/licenses/by/4.0"],["dc.title","Genetic monogamy and mate choice in a pair-living primate"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","85"],["dc.bibliographiccitation.issue","2"],["dc.bibliographiccitation.journal","Immunogenetics"],["dc.bibliographiccitation.lastpage","93"],["dc.bibliographiccitation.volume","63"],["dc.contributor.author","Averdam, Anne"],["dc.contributor.author","Kuschal, Christiane"],["dc.contributor.author","Otto, Nicole"],["dc.contributor.author","Westphal, Nico"],["dc.contributor.author","Roos, Christian"],["dc.contributor.author","Reinhardt, Richard"],["dc.contributor.author","Walter, Lutz"],["dc.date.accessioned","2022-10-06T13:31:02Z"],["dc.date.available","2022-10-06T13:31:02Z"],["dc.date.issued","2010"],["dc.identifier.doi","10.1007/s00251-010-0487-3"],["dc.identifier.pii","487"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/115286"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-602"],["dc.relation.eissn","1432-1211"],["dc.relation.issn","0093-7711"],["dc.relation.orgunit","Deutsches Primatenzentrum"],["dc.title","Sequence analysis of the grey mouse lemur (Microcebus murinus) MHC class II DQ and DR region"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","3441"],["dc.bibliographiccitation.issue","11"],["dc.bibliographiccitation.journal","Molecular Biology and Evolution"],["dc.bibliographiccitation.lastpage","3450"],["dc.bibliographiccitation.volume","29"],["dc.contributor.author","Meyer, Thomas J."],["dc.contributor.author","McLain, Adam T."],["dc.contributor.author","Oldenburg, J. Michael"],["dc.contributor.author","Faulk, Christopher"],["dc.contributor.author","Bourgeois, Matthew G."],["dc.contributor.author","Conlin, Erin M."],["dc.contributor.author","Mootnick, Alan R."],["dc.contributor.author","de Jong, Pieter J."],["dc.contributor.author","Roos, Christian"],["dc.contributor.author","Carbone, Lucia"],["dc.contributor.author","Batzer, Mark A."],["dc.date.accessioned","2022-10-06T13:35:11Z"],["dc.date.available","2022-10-06T13:35:11Z"],["dc.date.issued","2012"],["dc.identifier.doi","10.1093/molbev/mss149"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/116036"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-602"],["dc.relation.eissn","1537-1719"],["dc.relation.issn","0737-4038"],["dc.relation.orgunit","Deutsches Primatenzentrum"],["dc.title","An Alu-Based Phylogeny of Gibbons (Hylobatidae)"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","198"],["dc.bibliographiccitation.firstpage","1"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","BMC Evolutionary Biology"],["dc.bibliographiccitation.lastpage","15"],["dc.bibliographiccitation.volume","19"],["dc.contributor.author","Zinner, Dietmar"],["dc.contributor.author","Groeneveld, Linn F"],["dc.contributor.author","Keller, Christina"],["dc.contributor.author","Roos, Christian"],["dc.date.accessioned","2019-11-10T04:17:11Z"],["dc.date.accessioned","2021-10-27T13:13:07Z"],["dc.date.available","2019-11-10T04:17:11Z"],["dc.date.available","2021-10-27T13:13:07Z"],["dc.date.issued","2019"],["dc.date.updated","2019-11-10T04:17:12Z"],["dc.description.abstract","Following publication of the original article [1], we have been notified that some of the NCB accession numbers were incorrectly associated to their corresponding taxon in the Additional file 1."],["dc.description.sponsorship","Open-Access-Publikationsfonds 2019"],["dc.identifier.doi","10.1186/s12862-019-1537-6"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/16639"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/91752"],["dc.language.iso","en"],["dc.notes.intern","Migrated from goescholar"],["dc.relation.iserratumof","/handle/2/112706"],["dc.relation.orgunit","Deutsches Primatenzentrum"],["dc.rights","CC BY 2.0"],["dc.rights.holder","The Author(s)."],["dc.rights.uri","https://creativecommons.org/licenses/by/2.0"],["dc.title","Correction to: Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization?"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.subtype","erratum_ja"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","661"],["dc.bibliographiccitation.issue","3"],["dc.bibliographiccitation.journal","Zoological Journal of the Linnean Society"],["dc.bibliographiccitation.lastpage","674"],["dc.bibliographiccitation.volume","175"],["dc.contributor.author","Pozzi, Luca"],["dc.contributor.author","Nekaris, K. Anne-Isola"],["dc.contributor.author","Perkin, Andrew"],["dc.contributor.author","Bearder, Simon K."],["dc.contributor.author","Pimley, Elizabeth R."],["dc.contributor.author","Schulze, Helga"],["dc.contributor.author","Streicher, Ulrike"],["dc.contributor.author","Nadler, Tilo"],["dc.contributor.author","Kitchener, Andrew"],["dc.contributor.author","Zischler, Hans"],["dc.contributor.author","Roos, Christian"],["dc.date.accessioned","2022-10-06T13:25:26Z"],["dc.date.available","2022-10-06T13:25:26Z"],["dc.date.issued","2015"],["dc.identifier.doi","10.1111/zoj.12286"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/114841"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-602"],["dc.relation.issn","0024-4082"],["dc.relation.orgunit","Deutsches Primatenzentrum"],["dc.title","Remarkable ancient divergences amongst neglected lorisiform primates"],["dc.title.alternative","Phylogeny of Lorisiform Primates"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","12"],["dc.bibliographiccitation.journal","Immunogenetics"],["dc.bibliographiccitation.volume","65"],["dc.contributor.author","Huchard, Elise"],["dc.contributor.author","Albrecht, Christina"],["dc.contributor.author","Schliehe-Diecks, Susanne"],["dc.contributor.author","Baniel, Alice"],["dc.contributor.author","Roos, Christian"],["dc.contributor.author","Kappeler, Peter M."],["dc.contributor.author","Brameier, Markus"],["dc.date.accessioned","2018-11-07T09:17:22Z"],["dc.date.available","2018-11-07T09:17:22Z"],["dc.date.issued","2013"],["dc.format.extent","905"],["dc.identifier.doi","10.1007/s00251-013-0737-2"],["dc.identifier.isi","000326923600009"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/28149"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Springer"],["dc.relation.issn","1432-1211"],["dc.relation.issn","0093-7711"],["dc.title","Large-scale MHC class II genotyping of a wild lemur population by next generation sequencing (vol 64, pg 895, 2012)"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dspace.entity.type","Publication"]]