Daniel, Rolf

[["dc.bibliographiccitation.firstpage","1"],["dc.bibliographiccitation.journal","Basic and Applied Ecology"],["dc.bibliographiccitation.lastpage","12"],["dc.bibliographiccitation.volume","49"],["dc.contributor.author","Tiede, Julia"],["dc.contributor.author","Diepenbruck, Melanie"],["dc.contributor.author","Gadau, Jürgen"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Scherber, Christoph"],["dc.date.accessioned","2021-04-14T08:30:12Z"],["dc.date.available","2021-04-14T08:30:12Z"],["dc.date.issued","2020"],["dc.identifier.doi","10.1016/j.baae.2020.09.004"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/83147"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-399"],["dc.relation.issn","1439-1791"],["dc.title","Seasonal variation in the diet of the serotine bat (Eptesicus serotinus): A high-resolution analysis using DNA metabarcoding"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","14183"],["dc.bibliographiccitation.issue","1"],["dc.bibliographiccitation.journal","Scientific Reports"],["dc.bibliographiccitation.volume","9"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Wemheuer, Bernd"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Vidal, Stefan"],["dc.date.accessioned","2020-03-12T08:51:55Z"],["dc.date.available","2020-03-12T08:51:55Z"],["dc.date.issued","2019"],["dc.description.abstract","Green islands (the re-greening of senescent leaf tissues) are particularly evident on leaves infected with fungal pathogens. To date, there is only a limited number of studies investigating foliar endophytic microorganisms in phytopathogen-infected leaves. Here, we analysed bacterial and fungal endophyte communities in leaves without green islands (control leaves; CL), within green island areas (GLA) and the surrounding yellow leaf areas (YLA) of leaves with green islands of Acer campestre and A. platanoides. GLA samples of A. campestre and A. platanoides were dominated by Sawadaea polyfida and S. bicornis, respectively, suggesting that these fungi might be responsible for the green islands. We detected a higher fungal richness and diversity in CL compared to GLA samples of A. campestre. Leaf status (CL, GLA, YLA) significantly altered the composition of fungal communities of A. campestre. This was related to differences in fungal community composition between YLA and GLA samples. Site was the main driver of bacterial communities, suggesting that bacterial and fungal endophytes are shaped by different factors. Overall, we observed Acer species-specific responses of endophyte communities towards the presence of green islands and/or leaf type, which might be attributed to several fungi and bacteria specifically associated with one Acer species."],["dc.identifier.doi","10.1038/s41598-019-50540-2"],["dc.identifier.pmid","31578453"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/16477"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/63324"],["dc.language.iso","en"],["dc.notes.intern","Merged from goescholar"],["dc.relation.eissn","2045-2322"],["dc.relation.issn","2045-2322"],["dc.rights","CC BY 4.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/4.0"],["dc.title","Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","27035"],["dc.bibliographiccitation.journal","Scientific Reports"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Thies, Stephan"],["dc.contributor.author","Rausch, Sonja Christina"],["dc.contributor.author","Kovacic, Filip"],["dc.contributor.author","Schmidt-Thaler, Alexandra"],["dc.contributor.author","Wilhelm, Susanne"],["dc.contributor.author","Rosenau, Frank"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Streit, Wolfgang"],["dc.contributor.author","Pietruszka, Joerg"],["dc.contributor.author","Jaeger, Karl-Erich"],["dc.date.accessioned","2018-11-07T10:12:50Z"],["dc.date.available","2018-11-07T10:12:50Z"],["dc.date.issued","2016"],["dc.description.abstract","DNA derived from environmental samples is a rich source of novel bioactive molecules. The choice of the habitat to be sampled predefines the properties of the biomolecules to be discovered due to the physiological adaptation of the microbial community to the prevailing environmental conditions. We have constructed a metagenomic library in Escherichia coli DH10b with environmental DNA (eDNA) isolated from the microbial community of a slaughterhouse drain biofilm consisting mainly of species from the family Flavobacteriaceae. By functional screening of this library we have identified several lipases, proteases and two clones (SA343 and SA354) with biosurfactant and hemolytic activities. Sequence analysis of the respective eDNA fragments and subsequent structure homology modelling identified genes encoding putative N-acyl amino acid synthases with a unique two-domain organisation. The produced biosurfactants were identified by NMR spectroscopy as N-acyltyrosines with N-myristoyltyrosine as the predominant species. Critical micelle concentration and reduction of surface tension were similar to those of chemically synthesised N-myristoyltyrosine. Furthermore, we showed that the newly isolated N-acyltyrosines exhibit antibiotic activity against various bacteria. This is the first report describing the successful application of functional high-throughput screening assays for the identification of biosurfactant producing clones within a metagenomic library."],["dc.identifier.doi","10.1038/srep27035"],["dc.identifier.isi","000377332000001"],["dc.identifier.pmid","27271534"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/13398"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/40317"],["dc.notes.intern","Merged from goescholar"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Nature Publishing Group"],["dc.relation.issn","2045-2322"],["dc.rights","CC BY 4.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/4.0"],["dc.title","Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1287"],["dc.bibliographiccitation.issue","4"],["dc.bibliographiccitation.journal","Environmental Microbiology"],["dc.bibliographiccitation.lastpage","1305"],["dc.bibliographiccitation.volume","21"],["dc.contributor.author","Wicke, Dennis"],["dc.contributor.author","Schulz, Lisa M."],["dc.contributor.author","Lentes, Sabine"],["dc.contributor.author","Scholz, Patricia"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Gibhardt, Johannes"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Ischebeck, Till"],["dc.contributor.author","Commichau, Fabian M."],["dc.date.accessioned","2021-06-01T10:47:09Z"],["dc.date.available","2021-06-01T10:47:09Z"],["dc.date.issued","2019"],["dc.identifier.doi","10.1111/1462-2920.14534"],["dc.identifier.eissn","1462-2920"],["dc.identifier.issn","1462-2912"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/85504"],["dc.language.iso","en"],["dc.notes.intern","DOI-Import GROB-425"],["dc.relation.eissn","1462-2920"],["dc.relation.issn","1462-2912"],["dc.title","Identification of the first glyphosate transporter by genomic adaptation"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","e00878-13"],["dc.bibliographiccitation.issue","6"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","1"],["dc.contributor.author","Dib, J. R."],["dc.contributor.author","Schuldes, J."],["dc.contributor.author","Thurmer, A."],["dc.contributor.author","Farias, M. E."],["dc.contributor.author","Daniel, R."],["dc.contributor.author","Meinhardt, F."],["dc.date.accessioned","2014-08-27T10:13:29Z"],["dc.date.accessioned","2021-10-27T13:11:17Z"],["dc.date.available","2014-08-27T10:13:29Z"],["dc.date.available","2021-10-27T13:11:17Z"],["dc.date.issued","2013"],["dc.description.abstract","pAP13 is an 89-kb linear plasmid hosted by Brevibacterium sp. strain Ap13, an actinobacterium isolated from the feces of a flamingo from an extremely high-altitude lake in Argentina. Because of the ecological importance of the genus Brevibacterium, the absolute lack of information concerning Brevibacterium linear plasmids, and the possible ecological significance of this unusual plasmid, pAP13 was completely sequenced, including the inversely oriented termini."],["dc.identifier.doi","10.1128/genomeA.00878-13"],["dc.identifier.fs","601912"],["dc.identifier.pmid","24285657"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/10709"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/91580"],["dc.language.iso","en"],["dc.notes.intern","Migrated from goescholar"],["dc.relation.issn","2169-8287"],["dc.relation.orgunit","Fakultät für Biologie und Psychologie"],["dc.rights","CC BY 3.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/3.0"],["dc.title","Complete Genome Sequence of pAP13, a Large Linear Plasmid of a Brevibacterium Strain Isolated from a Saline Lake at 4,200 Meters above Sea Level in Argentina"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.firstpage","1935"],["dc.bibliographiccitation.issue","8"],["dc.bibliographiccitation.journal","Ecology and Evolution"],["dc.bibliographiccitation.lastpage","1948"],["dc.bibliographiccitation.volume","2"],["dc.contributor.author","Danielsen, Lara"],["dc.contributor.author","Thürmer, A."],["dc.contributor.author","Meinicke, P."],["dc.contributor.author","Buée, Marc"],["dc.contributor.author","Morin, E."],["dc.contributor.author","Martin, Francis"],["dc.contributor.author","Pilate, Gilles"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Polle, Andrea"],["dc.contributor.author","Reich, M."],["dc.date.accessioned","2017-09-07T11:49:14Z"],["dc.date.available","2017-09-07T11:49:14Z"],["dc.date.issued","2012"],["dc.description.abstract","Fungal communities play a key role in ecosystem functioning. However, only little is known about their composition in plant roots and the soil of biomass plantations. The goal of this study was to analyze fungal biodiversity in their belowground habitats and to gain information on the strategies by which ectomycorrhizal (ECM) fungi form colonies. In a 2‐year‐old plantation, fungal communities in the soil and roots of three different poplar genotypes (Populus × canescens, wildtype and two transgenic lines with suppressed cinnamyl alcohol dehydrogenase activity) were analyzed by 454 pyrosequencing targeting the rDNA internal transcribed spacer 1 (ITS) region. The results were compared with the dynamics of the root‐associated ECM community studied by morphotyping/Sanger sequencing in two subsequent years. Fungal species and family richness in the soil were surprisingly high in this simple plantation ecosystem, with 5944 operational taxonomic units (OTUs) and 186 described fungal families. These findings indicate the importance that fungal species are already available for colonization of plant roots (2399 OTUs and 115 families). The transgenic modification of poplar plants had no influence on fungal root or soil communities. Fungal families and OTUs were more evenly distributed in the soil than in roots, probably as a result of soil plowing before the establishment of the plantation. Saprophytic, pathogenic, and endophytic fungi were the dominating groups in soil, whereas ECMs were dominant in roots (87%). Arbuscular mycorrhizal diversity was higher in soil than in roots. Species richness of the root‐associated ECM community, which was low compared with ECM fungi detected by 454 analyses, increased after 1 year. This increase was mainly caused by ECM fungal species already traced in the preceding year in roots. This result supports the priority concept that ECMs present on roots have a competitive advantage over soil‐localized ECM fungi."],["dc.identifier.doi","10.1002/ece3.305"],["dc.identifier.gro","3147227"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/9771"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/4859"],["dc.language.iso","en"],["dc.notes.intern","Merged from goescholar"],["dc.notes.status","final"],["dc.notes.submitter","chake"],["dc.relation.issn","2045-7758"],["dc.rights","CC BY 3.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/3.0"],["dc.title","Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities"],["dc.type","journal_article"],["dc.type.internalPublication","unknown"],["dc.type.peerReviewed","no"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","5"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Wemheuer, Franziska"],["dc.contributor.author","Hollensteiner, Jacqueline"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Liesegang, Heiko"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Wemheuer, Bernd"],["dc.date.accessioned","2020-04-28T12:41:35Z"],["dc.date.available","2020-04-28T12:41:35Z"],["dc.date.issued","2018"],["dc.description.abstract","Bacillus mycoides GM6LP is an endophyte isolated from plant tissues of Lolium perenne L. Here, we report its draft genome sequence (6.2 Mb), which contains 96 contigs and 6,129 protein-coding genes. Knowledge about its genome will enable us to evaluate the potential use of GM6LP as a plant growth-promoting bacterium."],["dc.identifier.doi","10.1128/genomeA.00011-18"],["dc.identifier.eissn","2169-8287"],["dc.identifier.pmid","29437086"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/64449"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.relation.issn","2169-8287"],["dc.title","Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","18"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","6"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Neubauer, Hannes"],["dc.contributor.author","Niemeyer, Philipp"],["dc.contributor.author","Daniel, Rolf"],["dc.date.accessioned","2020-12-10T18:36:56Z"],["dc.date.available","2020-12-10T18:36:56Z"],["dc.date.issued","2018"],["dc.identifier.doi","10.1128/genomeA.00376-18"],["dc.identifier.eissn","2169-8287"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76786"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","First Insight into the Genome Sequence of Clostridium liquoris DSM 100320, a Butyrate- and Ethanol-Producing Bacterium"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.issue","3"],["dc.bibliographiccitation.journal","Genome Announcements"],["dc.bibliographiccitation.volume","4"],["dc.contributor.author","Poehlein, Anja"],["dc.contributor.author","Schilling, Tobias"],["dc.contributor.author","Bhaskar Sathya Narayanan, Udhaya"],["dc.contributor.author","Daniel, Rolf"],["dc.date.accessioned","2020-12-10T18:36:56Z"],["dc.date.available","2020-12-10T18:36:56Z"],["dc.date.issued","2016"],["dc.identifier.doi","10.1128/genomeA.00385-16"],["dc.identifier.eissn","2169-8287"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/76790"],["dc.language.iso","en"],["dc.notes.intern","DOI Import GROB-354"],["dc.title","First Insights into the Draft Genome of Clostridium colicanis DSM 13634, Isolated from Canine Feces"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dspace.entity.type","Publication"]]

[["dc.bibliographiccitation.artnumber","324"],["dc.bibliographiccitation.journal","BMC Genomics"],["dc.bibliographiccitation.volume","12"],["dc.contributor.author","Kalhoefer, Daniela"],["dc.contributor.author","Thole, Sebastian"],["dc.contributor.author","Voget, Sonja"],["dc.contributor.author","Lehmann, Ruediger"],["dc.contributor.author","Liesegang, Heiko"],["dc.contributor.author","Wollher, Antje"],["dc.contributor.author","Daniel, Rolf"],["dc.contributor.author","Simon, Meinhard"],["dc.contributor.author","Brinkhoff, Thorsten"],["dc.date.accessioned","2018-11-07T08:54:59Z"],["dc.date.available","2018-11-07T08:54:59Z"],["dc.date.issued","2011"],["dc.description.abstract","Background: Roseobacter litoralis OCh149, the type species of the genus, and Roseobacter denitrificans OCh114 were the first described organisms of the Roseobacter clade, an ecologically important group of marine bacteria. Both species were isolated from seaweed and are able to perform aerobic anoxygenic photosynthesis. Results: The genome of R. litoralis OCh149 contains one circular chromosome of 4,505,211 bp and three plasmids of 93,578 bp (pRLO149_94), 83,129 bp (pRLO149_83) and 63,532 bp (pRLO149_63). Of the 4537 genes predicted for R. litoralis, 1122 (24.7%) are not present in the genome of R. denitrificans. Many of the unique genes of R. litoralis are located in genomic islands and on plasmids. On pRLO149_83 several potential heavy metal resistance genes are encoded which are not present in the genome of R. denitrificans. The comparison of the heavy metal tolerance of the two organisms showed an increased zinc tolerance of R. litoralis. In contrast to R. denitrificans, the photosynthesis genes of R. litoralis are plasmid encoded. The activity of the photosynthetic apparatus was confirmed by respiration rate measurements, indicating a growth-phase dependent response to light. Comparative genomics with other members of the Roseobacter clade revealed several genomic regions that were only conserved in the two Roseobacter species. One of those regions encodes a variety of genes that might play a role in host association of the organisms. The catabolism of different carbon and nitrogen sources was predicted from the genome and combined with experimental data. In several cases, e. g. the degradation of some algal osmolytes and sugars, the genome-derived predictions of the metabolic pathways in R. litoralis differed from the phenotype. Conclusions: The genomic differences between the two Roseobacter species are mainly due to lateral gene transfer and genomic rearrangements. Plasmid pRLO149_83 contains predominantly recently acquired genetic material whereas pRLO149_94 was probably translocated from the chromosome. Plasmid pRLO149_63 and one plasmid of R. denitrifcans (pTB2) seem to have a common ancestor and are important for cell envelope biosynthesis. Several new mechanisms of substrate degradation were indicated from the combination of experimental and genomic data. The photosynthetic activity of R. litoralis is probably regulated by nutrient availability."],["dc.identifier.doi","10.1186/1471-2164-12-324"],["dc.identifier.isi","000292985100001"],["dc.identifier.pmid","21693016"],["dc.identifier.purl","https://resolver.sub.uni-goettingen.de/purl?gs-1/6835"],["dc.identifier.uri","https://resolver.sub.uni-goettingen.de/purl?gro-2/22799"],["dc.notes.intern","Merged from goescholar"],["dc.notes.status","zu prüfen"],["dc.notes.submitter","Najko"],["dc.publisher","Biomed Central Ltd"],["dc.relation.issn","1471-2164"],["dc.rights","CC BY 2.0"],["dc.rights.uri","https://creativecommons.org/licenses/by/2.0"],["dc.title","Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis"],["dc.type","journal_article"],["dc.type.internalPublication","yes"],["dc.type.peerReviewed","yes"],["dc.type.status","published"],["dc.type.version","published_version"],["dspace.entity.type","Publication"]]